Detailed information on CNT30357259


BLAST search results

BLAST vs Swiss-Prot:
sp|P05993|PAPA5_CARPA, E-value = 7e-11

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30616633Lactuca sativaSesamum indicum10.2624.8882.18101forward
CNT30462305Lactuca sativaSaccharum spontaneum8.4320.2485.5483forward
CNT30718002Lactuca sativaMalus domestica golden10.3733.8982.35102forward

Expression of CNT30357259

Peptides detected in this lncRNA

>peptide 1 (36 aa)
MLGCPILCNKHELKVTNFLHGTKSLLFCYIGYDRTV*

>peptide 2 (31 aa)
MLVCHILCNKHELKVTNFLNGTKSLLIYYIG*

>peptide 3 (61 aa)
MWAATVMILTASSSLQRAAAPSKAITIILIDTATGSSFRAGVTGDGGDGPGFGGFWPVLMG*

>peptide 4 (59 aa)
MAPLLYHKALFYPQCFFPFSSNLIHPTLLPMSSSLSNSLSRLGSRTQLPAHRGLKRSHIF

>peptide 5 (68 aa)
SVSINNQTINQIQNNTNIQMKGYSRLFSQTPSTFLNEKNYKLSFTYCNSCPNQIYLFVKPKHGTVFLI*

Sequence

>CNT30357259
CTCTGTTTCCATCAACAATCAAACCATTAATCAAATACAAAACAACACAAACATCCAAATGAAAGGGTATTCACGTCTTTTTTCACAAACTCCTTCAACC
TTTTTGAATGAGAAAAATTACAAATTGTCTTTTACATATTGTAATTCTTGTCCCAATCAAATTTACTTATTTGTAAAACCCAAACATGGCACTGTGTTCT
TAATATAACAAACTTTTTGTATGGTACAAAAAGTTTGTTATTTTGTTACATAGGATATGACAGAATAGTCTAGCATTGCAAACCGATACAATGCTAGGAT
GTCCTATCCTATGTAACAAACATGAGCTTAAGGTAACAAATTTTTTGCATGGTACAAAAAGTTTGTTATTTTGTTACATAGGGTATGACAGAACAGTCTA
GCATTGCAAACCAGTACAATGCTAGTATGTCATATCCTATGTAACAAACATGAGCTTAAGGTAACAAACTTTTTGAATGGTACAAAAAGTTTGTTAATCT
ATTATATAGGATAGGACAGAGTCTGTCCTATCCTACATAATAAACAAGAGCTTAGCTTAAGGTAACAAACTAACCTTTGAGCAAGTACCCCTGCACACAT
CGCAAATGGGGTAATCATGTGGGCAGCAACTGTAATGATCCTCACAGCAAGTAGCTCCCTCCAACGGGCAGCAGCCCCAAGCAAAGCAATAACCATAATA
CTCATAGATACAGCAACAGGTAGTTCCTTCCGGGCAGGTGTGACCGGTGATGGTGGAGATGGGCCAGGGTTCGGTGGGTTTTGGCCAGTTTTGATGGGGT
AAGATGGCTCCATTGCTATACCACAAAGCCCTGTTTTATCCGCAATGTTTCTTTCCATTTTCAAGTAACCTGATTCACCCCACTCTGCTCCCCATGAGTT
CTTCACTATCCAATAGTCTTTCCCGTCTTGGGTCCCGTACCCAACTGCCAGCACACCGTGGTCTAAAGCGGTCCCACATTTTCC