« Back to Prunus avium search


Detailed information on CNT30704355


BLAST search results

BLAST vs Swiss-Prot:
sp|P25251|CYSP4_BRANA, E-value = 1e-63

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT3042656Prunus aviumPrunus dulcis23.1241.3297.46276forward
CNT30586158Prunus aviumMusa acuminata14.7442.4180.11176forward
CNT3085565Prunus aviumVigna radiata7.1230.6984.7185forward
CNT30236731Prunus aviumBrassica oleracea9.4628.3981.42113forward
CNT30143968Prunus aviumMedicago truncatula8.1228.7882.4797forward
CNT3080090Prunus aviumBrassica juncea10.5531.1980.95126forward
CNT30454273Prunus aviumSaccharum spontaneum8.8848.8585.85106forward
CNT3017024Prunus aviumZea mays12.7375.6280.92152forward
CNT30718002Prunus aviumMalus domestica golden17.7670.4391.51212forward
CNT30596150Prunus aviumOryza meridionalis10.9755.5183.97131forward
CNT30370131Prunus aviumOryza glumipatula10.9762.3883.97131forward
CNT3025942Prunus aviumPopulus trichocarpa5.720.5486.7668forward
CNT30116501Prunus aviumOryza nivara7.4521.7685.3989forward

Expression of CNT30704355

Peptides detected in this lncRNA

>peptide 1 (54 aa)
MNYITGNPCHLLQWQQQLADWKQPFAMLSHRMQEHLHNHQWKPPWHFSAKTTKV*

>peptide 2 (45 aa)
MRPPLHPSLYVLSQSTSSCSDSERRSPVTSLLIPSTEQIVANAQQL

>peptide 3 (33 aa)
MHDVNRALYTYKSAYEIIHNRQTIHFLESKCWI*

>peptide 4 (41 aa)
MVITASGALKWTTSPSKAVVCILINTAAGVALRAGVVIITN*

>peptide 5 (40 aa)
WPNERSCSIIKRSTISRIRMKHFIKANAKFMTEFTEHIGN*

Sequence

>CNT30704355
TGGCCAAATGAAAGATCATGTTCCATTATTAAGCGAAGTACAATAAGTAGGATCCGAATGAAGCACTTCATAAAGGCGAATGCCAAATTCATGACTGAAT
TTACAGAACATATTGGTAATTGACAACAATCTGTTTGTCTATAACTCAAATGCATGACGTAAATAGAGCGCTATATACATACAAATCAGCATATGAAATA
ATCCATAACAGACAAACTATCCATTTCTTGGAATCTAAATGTTGGATATGAGAGAGTGAGCAAGTATGATAAATGAAGAAGAAGAATATCAAGGTGCCCT
GATTTTTCATCCTTCCTAGCTTTTGGTGTCTTACCAGTTGACAGGTTCCTGCGTTGACATTGCAGACTGGATAGTCACTTGGGCAGCAACTATAATGGTC
ATCACAGCAAGTGGCGCCCTCAAGTGGACAACATCCCCAAGCAAAGCAGTAGTTTGCATACTCATAAATACAGCAGCAGGTGTTGCTCTCAGGGCAGGAG
TAGTAATTATCACAAACTGACGGGGGCTGTACCGGAGACGGAGGAGATGGACCAGGGTTCGGGGGCCTCCATTGCAATTCCACATATTCCATGTGCGGTG
TTGCCCAGGTTACGCTCCATCCTGATGTAGCCTTCCTCTCCCCAGCTGCCACCCCATGAATTTCTCACTATCCAGTAATCAACTCCTTTGTCTGTTCCAT
ATCCCACAACTGTAACACCATGAATTATATAACTGGAAATCCCTGCCACCTCCTTCAATGGCAACAGCAATTGGCTGATTGGAAACAGCCTTTTGCAATG
CTTTCTCATCGTATGCAGGAACATCTTCATAATCATCAATGGAAACCACCTTGGCATTTTTCTGCAAAGACAACAAAGGTATGAGAATATAGCTAAAAAA
TTTCAGCCATCTGTTCTGTTTTTGTTTAAAACATTAAATTACAAAAACAAAACCAACCCTGTAGGTGTCACAGGTGGCATCATATCCTTTGTAAGGATAA
TCCTCTTCACTGTCAATTCCACCATTGCTGATGATGAACTCGAAGGCATAATCCATGAGACCTCCATTGCATCCTTCATTGTATGTTTTGTCACAGTCAA
CCAGCTCCTGCTCAGATAGTGAGAGGAGATCTCCAGTCACTAGCTTGTTGATCCCTTCCACCGAACAGATTGTAGCGAATGCCCAGCAACTCCC