Detailed information on CNT30567368


BLAST search results

BLAST vs Swiss-Prot:
sp|P25776|ORYA_ORYSJ, E-value = 1e-50

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30373235Actinidia chinensisArabidopsis thaliana22.0316.884.92126forward
CNT30616633Actinidia chinensisSesamum indicum17.4824.6386100forward
CNT3042661Actinidia chinensisPrunus dulcis17.1333.2285.7198forward
CNT30586158Actinidia chinensisMusa acuminata43.8860.4878.49251forward
CNT30236731Actinidia chinensisBrassica oleracea21.8531.4182.4125forward
CNT3080090Actinidia chinensisBrassica juncea22.0331.1983.33126forward
CNT30462305Actinidia chinensisSaccharum spontaneum20.2828.2987.07116forward
CNT3017024Actinidia chinensisZea mays20.859.286.55119forward
CNT30718002Actinidia chinensisMalus domestica golden19.2336.5487.27110forward
CNT30366246Actinidia chinensisSorghum bicolor18.1822.5687.5104forward
CNT30119217Actinidia chinensisCitrus clementina22.914.5487.02131forward

Expression of CNT30567368

Peptides detected in this lncRNA

>peptide 1 (32 aa)
RQMQVTSFRSPSLITTFKNSFAFKNSFTEHFT*

>peptide 2 (73 aa)
MKRTVEFLPLSRCQRKRYKSDNHGGSNCNGHHSRWRLQAGSIPRQSNTCHIHRHSSKCCSRDKYSNHRKQLEA*

>peptide 3 (82 aa)
MGAATVMVITAGGAFKRAASPGKAILAIFIDTAASAALGTSIVIIANSWRLNWRWRRWAGVGGILTRLDRVRGLHCNSTFACG

Sequence

>CNT30567368
ATCGACAAATGCAAGTCACATCTTTTAGGTCACCCAGTTTGATTACTACTTTCAAAAACAGTTTTGCTTTCAAAAACAGTTTCACAGAGCACTTCACATA
AAACTCTTTCTGAAAACAAAAACTCTATATCGTGTTCATTTTGATTTAAGAACAATTTTTTTGTGTGTGTTCTGAAAAACAAATCACCAAACCAGTAAAC
AAAAAGATAACAAAAACGATACAAAACAGGACATCTGCAGTAGCATAATTCTGTAAATGAAGAGAACAGTAGAATTCTTACCATTAAGCAGGTGCCAGCG
TAAACGTTACAAATCGGATAATCATGGGGGCAGCAACTGTAATGGTCATCACAGCAGGTGGCGCCTTCAAGCGGGCAGCATCCCCAGGCAAAGCAATACT
TGCCATATTCATAGACACAGCAGCAAGTGCTGCTCTCGGGACAAGTATAGTAATCATCGCAAACAGTTGGAGGCTTAATTGGAGATGGAGGAGATGGGCC
GGGGTTGGGGGGATTTTGACCCGTCTTGATAGGGTAAGAGGCCTGCACTGCAATTCCACATTTGCCTGTGGC