Detailed information on CNT30653821


BLAST search results

BLAST vs Swiss-Prot:
sp|P25776|ORYA_ORYSJ, E-value = 5e-54

BLAST vs NONCODE:
NONVVIT001489, E-value = 2e-39

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30676299Rosa chinensisSetaria viridis22.3415.7883.7286forward
CNT30567369Rosa chinensisActinidia chinensis44.1633.681.76170forward
CNT30718002Rosa chinensisMalus domestica golden45.9758.887.57177forward
CNT30344730Rosa chinensisEragrostis tef23.647.7285.7191forward
CNT3033018Rosa chinensisTheobroma cacao74.2932.8779.37286forward
CNT30119217Rosa chinensisCitrus clementina34.0314.5484.73131forward

Expression of CNT30653821

Peptides detected in this lncRNA

>peptide 1 (38 aa)
MGSNCNGHHSSRCCSRGRRSSCHKPEEVLSEMEEMDQG*

>peptide 2 (75 aa)
MVITAAGVALGAGEVVVTNLRRFYRRWRRWTRVRGILSYLDGVRSLHCNSTFPGCGVTQITLHSDVPCLSPAGTP*

Sequence

>CNT30653821
CAGCTGACAGGTTCCTGCATTGACATTGCAGACGGGGTAGTCTGATGGGCAGCAACTGTAATGGTCATCACAGCAGCAGGTGTTGCTCTCGGGGCAGGAG
AAGTAGTTGTCACAAACCTGAGGAGGTTTTATCGGAGATGGAGGAGATGGACCAGGGTTAGGGGGATTCTGTCCTACCTTGACGGGGTAAGAAGCCTCCA
TTGCAATTCCACATTTCCCGGTTGCGGTGTTACCCAGATTACGCTCCATTCTGATGTACCCTGCCTCTCCCCAGCTGGCACCCCATGAATTCCTCACAAT
CCAGTAATCAACGCCATGGTCTGTGCCGTATCCAACAACAGTAACACCATGGTCTAGTGCTGTCCCACACCGTCCAGTAAACACA