Detailed information on CNT30366246


BLAST search results

BLAST vs Swiss-Prot:
sp|P25776|ORYA_ORYSJ, E-value = 4e-34

BLAST vs NONCODE:
NONVVIT001489, E-value = 2e-11

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30567368Sorghum bicolorActinidia chinensis22.5618.1887.5104forward
CNT30586158Sorghum bicolorMusa acuminata31.2434.783.33144forward
CNT30462305Sorghum bicolorSaccharum spontaneum30.834.6399.3142forward
CNT3017024Sorghum bicolorZea mays31.2471.6495.83144forward
CNT3067329Sorghum bicolorLeersia perrieri16.0529.1393.2474forward
CNT30718002Sorghum bicolorMalus domestica golden22.1333.8983.33102forward
CNT3063316Sorghum bicolorSelaginella moellendorffii17.3535.0986.2580forward

Expression of CNT30366246

Peptides detected in this lncRNA

>peptide 1 (84 aa)
MSDQVIILHAGALITLAVDGLNAMLRFLKRCSSCHQCRFPAGRCRWGSHGGSSCSDRHSRWRPRAGSSPRRSSTCHTRRCSSRWC

>peptide 2 (62 aa)
MPCCVFSSAALHAISAGSLLDVADGVVMGAAAVVIVTAGGALERAAAPGEAVLAILVDAAAGG

>peptide 3 (40 aa)
MYRSTYYRDIGKQRPPSHALVKDERPGDHFACWGSNHPGC*

Sequence

>CNT30366246
ATTTCCATAACATCAATATCAATTGCAGTTCTGTCGAACTGAAGCGAGGAGCTTAGCAGAGCTAGCTGAATTTTACATTATATGCAAAAGCAAATTTGGC
AGAGTTCGATAAACAACTGAACCCATTTTTTCAGGCTTTATGTACAGGAGTACCTACTATAGGGATATAGGTAAACAGCGACCGCCGAGCCATGCTTTAG
TCAAGGATGAGCGACCAGGTGATCATTTTGCATGCTGGGGCTCTAATCACCCTGGCTGTTGACGGCCTTAATGCCATGCTGCGTTTTCTCAAGCGCTGCT
CTTCATGCCATCAGTGCAGGTTCCCTGCTGGACGTTGCAGATGGGGTAGTCATGGGGGCAGCAGCTGTAGTGATCGTCACAGCAGGTGGCGCCCTCGAGC
GGGCAGCAGCCCCAGGCGAAGCAGTACTTGCCATACTCGTAGATGCAGCAGCAGGTGGTGC