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Detailed information on CNT30449388


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30694844Saccharum spontaneumOryza sativa16.5423.2298.8285forward
CNT30677986Saccharum spontaneumSetaria viridis13.0421.4110067forward
CNT30219096Saccharum spontaneumKalanchoe fedtschenkoi16.3423.9395.2484forward
CNT30363122Saccharum spontaneumSorghum bicolor47.8662.9289.02246reverse complement
CNT30581427Saccharum spontaneumEchinochloa crusgalli16.9320.9198.8587forward
CNT30499286Saccharum spontaneumDigitaria exilis16.9320.7197.787forward

Expression of CNT30449388

Peptides detected in this lncRNA

>peptide 1 (55 aa)
IPARVSPLALLYRSAARARAAAAIASQASLPQPPPRGREREESRRLEREAAVPPR*

>peptide 2 (48 aa)
MYLKIFTIRLSVICTEAYRHLNMIPKLFSQQNHYCIKCFSFGFSTCVA*

>peptide 3 (45 aa)
SLLGLAHWLSYIEARRELAPPPLSHHKPLFPSPLREGESERSRAG*

Sequence

>CNT30449388
TATCCCTGCTAGGGTTAGCCCACTGGCTCTCCTATATAGAAGCGCGGCGAGAGCTCGCGCCGCCGCCGCTATCGCATCACAAGCCTCTCTTCCCCAGCCC
CCTCCGAGAGGGCGAGAGCGAGAGGAGTCGCGCCGGCTAGAGCGCGAGGCAGCCGTCCCGCCGCGATGAGGGCCAAGTGGAAGAAGAAGCGGATGAGGCG
GCTCAAGAGGAAGCGCCGAAAGATGAGGCAGAGATCCAAGTAGGCTGGTCCATGCAGTGTCAGCTCGAGTCTTTGCGTTCGGTTGCTGTTTACTAAATAA
TTCTAGTTTTTTTAGTAACGGCGTCGTCTGTAATGTATCTGAAGATTTTTACAATCCGTCTATCCGTGATCTGTACTGAAGCCTACCGTCATCTGAATAT
GATTCCGAAACTTTTTTCCCAACAGAACCATTATTGCATCAAGTGTTTTTCCTTTGGTTTCAGTACTTGTGTTGCCTAATTTTTACTGTAAAGAAAATCT
CGTCCTGAATCTAG