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Detailed information on CNT30341799


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30694844Eragrostis tefOryza sativa18.8123.2298.8285forward
CNT30677986Eragrostis tefSetaria viridis15.4922.3698.5770forward
CNT30549577Eragrostis tefIpomoea triloba17.4822.0792.4179reverse complement
CNT30244088Eragrostis tefAvena sativa24.3420.7993.64110forward
CNT30580802Eragrostis tefEchinochloa crusgalli24.3423.3193.64110forward
CNT30499286Eragrostis tefDigitaria exilis24.3426.1995.45110forward
CNT30593653Eragrostis tefEragrostis curvula72.3571.5594.19327forward
CNT30556718Eragrostis tefPanicum hallii23.8924.1197.22108forward

Expression of CNT30341799

Peptides detected in this lncRNA

>peptide 1 (50 aa)
MCLVLSVIWLSVMTTDVSILPEVSCVTSSEFHNIFSYSQLVKCRQLQVLC*

Sequence

>CNT30341799
GTCGATCTTCTCCAGCCACGCCACTTCGCCGTCTGATCTCTGAAGACTAGGGGCGCGCCGGCGAGCGAGCTCCACCGCCGCGATGAGGGCTAAGTGGAAG
AAGAAGAGGATGAGGCGGCTCAAGAGGAAGCGCCGAAAGATGAGGCAGAGATCCAAGTAGACATCCCTAGAGTTATCTGCGTTGGAGGATCCTGTGCTGA
TCAATTGTTTCTTTTGATCATTTTAGATATTTTTCCCCTAGCCAGTGGAAAGAGTGCTGTAATGTGCTTAGTACTTTCTGTTATCTGGTTATCTGTAATG
ACAACTGACGTTTCCATTTTACCCGAAGTTAGTTGTGTGACATCATCCGAGTTCCACAACATTTTCTCCTATTCACAATTGGTAAAGTGCCGGCAGCTGC
AGGTTCTTTGCTAATGTTCTCTCGCTGTGCTGATCTCAACCTGAATAGGCAG