Detailed information on CNT30182840


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30135152Secale cerealeLolium perenne68.2936.8883.26239forward
CNT30683148Secale cerealeTriticum urartu69.1444.996.69242forward
CNT30720854Secale cerealeTriticum spelta80.2941.3883.63281forward
CNT30149185Secale cerealeBrachypodium distachyon21.4320.1185.3375forward

Expression of CNT30182840

Peptides detected in this lncRNA

>peptide 1 (29 aa)
MEQKPAPIYDMQHPIYRVFQLQKETTTVL*

>peptide 2 (98 aa)
RSGRSDAQKRLTITNKFRKKKDGTDVYSAYNRFFHCMSRKITGPWNKNLLQFTICSTRFTGYFNSKKKLLRYYENTSSILLKTMFDIRGYIRTLKTKQ*

Sequence

>CNT30182840
GCGAAGCGGAAGGAGTGACGCCCAAAAGCGCCTTACAATAACCAATAAATTCAGAAAAAAAAAAGATGGAACAGATGTGTACTCAGCATATAACAGGTTT
TTCCATTGTATGAGCAGGAAAATTACAGGACCATGGAACAAAAACCTGCTCCAATTTACGATATGCAGCACCCGATTTACAGGGTATTTCAACTCCAAAA
AGAAACTACTACGGTATTATGAAAACACAAGTTCCATATTATTAAAAACGATGTTCGATATCCGGGGATATATCAGGACTCTGAAAACCAAACAATGATA
CTGGTAAGCGGGACGCCCAAACGGGCCACAGCACCGAAGGCAGATCAATC