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Detailed information on CNT30586176


BLAST search results

BLAST vs Swiss-Prot:
sp|P50156|TIP11_ORYSJ, E-value = 1e-70

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30677458Musa acuminataSetaria viridis28.3640.3387.86173forward
CNT30641419Musa acuminataNymphaea colorata22.4623.2682.48137forward
CNT30524746Musa acuminataPhaseolus vulgaris39.0226.3380.25238forward
CNT30628432Musa acuminataVigna unguiculata26.5619.9882.72162forward
CNT30296934Musa acuminataTriticum aestivum28.3632.1685.55173forward
CNT30392788Musa acuminataTriticum turgidum62.7929.4286.16383forward
CNT3084543Musa acuminataVigna radiata17.3827.9786.79106forward
CNT30660459Musa acuminataTriticum dicoccoides21.3120.0986.15130forward
CNT3075983Musa acuminataBrassica juncea21.6418.8380.3132forward
CNT30136463Musa acuminataLolium perenne39.6733.0287.6242forward
CNT301194Musa acuminataZea mays39.5148.387.55241forward
CNT30623609Musa acuminataDaucus carota23.2825.2780.99142forward
CNT30352266Musa acuminataEragrostis tef17.382084.91106forward
CNT30620034Musa acuminataCajanus cajan27.2115.7983.13166forward
CNT30369235Musa acuminataOryza glumipatula39.5121.3782.57241forward
CNT30579791Musa acuminataEchinochloa crusgalli40.4919.687.04247forward
CNT3063260Musa acuminataSelaginella moellendorffii13.6122.1386.7583forward
CNT3050792Musa acuminataCucumis sativus29.1817.8479.21178forward

Expression of CNT30586176

Peptides detected in this lncRNA

>peptide 1 (58 aa)
MPRSSVMFPPTNAPKVTAGFTCPPEMLAPTDTATNKAKPCASAAAISPAGVAAPSLVNL

>peptide 2 (51 aa)
MEAPLKGPPTRMLAPTMKPMAMGAMVPVSSPPVEKRSRRQATVEPSSCAIQ*

Sequence

>CNT30586176
CGGAGCAGACATAAATAAGGATAAACAACAAGGTGCATGATCGAAGGAAGCAAAGTGCACGGACTTTTCGAAACAAGTACGTAGGAGCGCCGACGACTTC
GACAGCCGCCTCAGTAGTCGGTGGTGGGGAGCTGCTCGTGGGAGTGGCTGATGAAGAAGAACTCGTAGACGATCCCGGCGAGGCCGCCGCCGATGAGCGG
ACCGAGCCAGTAGATCCACTGGTGGGTCCAGGACCAGCTGACGAGGGCCGGGCCGAAGGACACGGCGGGGTTCATGGAGGCGCCGCTGAAGGGCCCGCCC
ACGAGGATGTTGGCGCCCACGATGAAGCCGATGGCGATGGGGGCGATGGTGCCGGTCTCGAGCCCGCCGGTGGAGAAGCGGAGCAGGAGGCAGGCCACCG
TGGAGCCCAGCAGCTGCGCGATCCAGTAGAGGATGCCCCGCAGCAGCGTGATGTTCCCGCCCACGAACGCTCCGAAGGTCACCGCCGGGTTCACGTGCCC
GCCGGAGATGTTAGCCCCCACCGACACCGCCACGAACAAGGCGAAGCCGTGCGCCAGCGCCGCCGCGATCAGTCCCGCGGGCGTCGCCGCCCCGTCGCTC
GTCAACTTGT