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Detailed information on CNT30522256


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30677458Setaria italicaSetaria viridis58.3363.64100273forward
CNT30712567Setaria italicaGlycine max15.172087.3271forward
CNT30223741Setaria italicaHordeum vulgare22.6527.1885.85106forward
CNT30392788Setaria italicaTriticum turgidum28.6310.2988.06134forward
CNT3084571Setaria italicaVigna radiata29.711.2784.89139forward
CNT30242094Setaria italicaAvena sativa16.4520.9290.9177forward
CNT30662885Setaria italicaTriticum dicoccoides28.6358.7788.81134forward
CNT30137220Setaria italicaLolium perenne27.148.6588.98127forward
CNT30721484Setaria italicaTriticum spelta28.6318.3388.06134forward
CNT30361046Setaria italicaSorghum bicolor30.7723.1193.06144forward
CNT30322744Setaria italicaAsparagus officinalis19.0226.3389.8989forward
CNT30575580Setaria italicaOryza barthii16.6723.2897.4478forward
CNT30579791Setaria italicaEchinochloa crusgalli31.6211.7593.24148forward

Expression of CNT30522256

Peptides detected in this lncRNA

>peptide 1 (51 aa)
MQSTRCEKTNQTAASTDQTDGTGRCARRRRRRLPKPQLSSRWWVAARGCGR*

>peptide 2 (46 aa)
MPEPWPAKTKMRVEMNSANAALRAPGWYTSSWLPTAILLIGIFTAL*

>peptide 3 (38 aa)
LDATDRSKPCERAQRRSSVHDYTVMMMGGDAKHAMREN*

>peptide 4 (32 aa)
MAPDGDPVDRHFHCPLALSLSNHRRRRLCLEDE

Sequence

>CNT30522256
ACTTGATGCGACTGATCGAAGCAAACCATGCGAGCGGGCGCAGCGGCGGAGTTCGGTTCATGACTACACGGTGATGATGATGGGCGGCGATGCAAAGCAC
GCGATGCGAGAAAACTAATCAAACGGCGGCGAGCACTGATCAAACGGACGGAACCGGCCGCTGCGCGCGACGTCGTCGACGGCGGCTACCGAAGCCTCAG
CTTAGTAGTCGGTGGTGGGTAGCTGCTCGTGGGTGTGGGAGATGAAGAGCACCTCGTAGATGACGCCGGCGAGGCCATGCCGGAGCCCTGGCCGGCGAAG
ACGAAGATGAGGGTGGAGATGAACTCAGCGAACGCCGCCTTGAGGGCACCCGGGTGGTACACCTCCTCATGGCTCCCGACGGCGATCCTGTTGATCGGCA
TTTTCACTGCCCTCTAGCTCTCTCACTCTCTAACCACAGAAGAAGACGACTGTGCTTGGAGGATGAGA