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Detailed information on CNT30242094


BLAST search results

BLAST vs Swiss-Prot:
sp|O64964|TIP11_MAIZE, E-value = 3e-31

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30677458Avena sativaSetaria viridis48.141.2691.53177forward
CNT30522256Avena sativaSetaria italica20.9216.4590.9177forward
CNT30628528Avena sativaVigna unguiculata27.4511.3984.16101forward
CNT30296934Avena sativaTriticum aestivum48.132.995.48177forward
CNT30392788Avena sativaTriticum turgidum52.9914.9894.36195forward
CNT3084586Avena sativaVigna radiata27.457.185.15101forward
CNT30552153Avena sativaOryza glaberrima28.5316.882.86105forward
CNT30660459Avena sativaTriticum dicoccoides31.5217.9382.76116forward
CNT30136463Avena sativaLolium perenne54.6227.4295.02201forward
CNT301194Avena sativaZea mays47.5535.0794.29175forward
CNT30229564Avena sativaAnanas comosus45.9224.683.43169forward
CNT30721484Avena sativaTriticum spelta21.4710.8194.9479forward
CNT30369415Avena sativaOryza glumipatula38.8615.4484.62143forward
CNT30575580Avena sativaOryza barthii21.223.2891.0378forward
CNT30579352Avena sativaEchinochloa crusgalli47.0124.8693.64173forward

Expression of CNT30242094

Peptides detected in this lncRNA

>peptide 1 (54 aa)
MDAPLKAAADEGADPVHPLVPPLPADERRAEGHGGVHGRAAEGAADEDVGTNDEA

>peptide 2 (92 aa)
HRRTNRLSSRLAGLVVGGGELLVAAVDEEQLVDDAGEAAADEGADPVHPLVPPLPADERRAEGHGGVHGRAAEGRRRRGGRPSTPTGTPTPS*

Sequence

>CNT30242094
CACAGACGTACGAACAGACTTTCAAGCCGCTTGGCTGGCTTAGTAGTCGGTGGTGGGGAGCTGCTCGTGGCTGCGGTTGATGAAGAGCAGCTCGTAGACG
ACGCCGGCGAGGCCGCCGCCGACGAGGGGGCCGACCCAGTACACCCACTGGTACCCCCACTCCCAGCTGACGAGCGCCGGGCCGAAGGACACGGCGGGGT
TCATGGACGCGCCGCTGAAGGCCGCCGCCGACGAGGGGGCCGACCCAGTACACCCACTGGTACCCCCACTCCCAGCTGACGAGCGCCGGGCCGAAGGACA
CGGCGGGGTTCATGGACGCGCCGCTGAAGGCGCCGCCGACGAGGATGTTGGCACCAACGATGAAGCCG