Detailed information on CNT30229564


BLAST search results

BLAST vs Swiss-Prot:
sp|P50156|TIP11_ORYSJ, E-value = 3e-69

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30677458Ananas comosusSetaria viridis23.733885.89163forward
CNT30296934Ananas comosusTriticum aestivum27.9535.6983.33192forward
CNT30392788Ananas comosusTriticum turgidum26.9314.2182.7185forward
CNT30586413Ananas comosusMusa acuminata24.8966.2888.3171forward
CNT30242094Ananas comosusAvena sativa24.645.9283.43169forward
CNT30579352Ananas comosusEchinochloa crusgalli24.8924.5784.8171forward

Expression of CNT30229564

Peptides detected in this lncRNA

>peptide 1 (78 aa)
MDAPVKAPKVMTISITSASPAPTPDSPKVPVASPPVEKRSSRQATVDPSSCAIQYSTPRSSVMFPPTNAPNVTAGFTCP

>peptide 2 (43 aa)
MHEIDSLRKNRKLTTSTACKDREFYAWKGGGLAGGCGVMIDDQ*

Sequence

>CNT30229564
GCAGCAGCAGAAACTCAACTCAGCATTATGAACAAAGAGCAGGAGTAGACGACATCGACGACGACCACGAATGATCGATCGGAAATAAAAGAAGATGACT
GAGAAAGAAAGACTCGAAATCAATACACCACCACCACCGATCGAACAACAGAATTAAACCATGCACGAGATAGATTCATTAAGAAAAAACAGGAAATTAA
CGACGAGTACTGCATGCAAGGATCGAGAATTTTATGCATGGAAAGGAGGCGGCTTGGCTGGGGGCTGTGGGGTGATGATCGATGATCAGTAGTCGGGCGG
GGGGATCTGCTCGTAGTTGGGGGTGATGAAGAAGACGTCGTAGACGATGGCGGCGATGGCGCCGCCAATGAGCGGGCCGACCCAGTAGACCCACTGGTAG
GCCCAGGACCAGCTGACGAGCGCGGGCCCGAAGGACACGGCCGGGTTCATGGACGCCCCCGTGAAGGCGCCGAAGGTCATGACGATCTCCATCACCAGCG
CCTCCCCCGCGCCCACGCCCGACAGCCCGAAGGTCCCCGTGGCCAGCCCGCCCGTCGAGAAGCGCAGCAGCAGGCAGGCCACCGTCGACCCCAGCAGCTG
CGCGATCCAGTACAGCACGCCGCGCAGCAGCGTGATGTTCCCCCCCACGAACGCCCCGAACGTCACCGCCGGGTTCACGTGCCCGCC