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Detailed information on CNT30672934


BLAST search results

BLAST vs Swiss-Prot:
sp|Q41803|EF1A_MAIZE, E-value = 4e-67

BLAST vs NONCODE:
NONMEST004097, E-value = 3e-103

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30288144Setaria viridisTriticum aestivum57.9786.4991.25320forward
CNT30386294Setaria viridisTriticum turgidum57.9786.9691.25320forward
CNT30562819Setaria viridisActinidia chinensis53.6258.7386.82296forward
CNT30658093Setaria viridisTriticum dicoccoides57.9773.2391.25320forward
CNT30608684Setaria viridisGossypium raimondii57.6175.5387.74318forward
CNT3067093Setaria viridisLeersia perrieri48.0159.2896.6265forward
CNT30646927Setaria viridisRosa chinensis57.2594.0589.87316forward
CNT30721809Setaria viridisTriticum spelta45.8316.7794.07253forward
CNT30338600Setaria viridisEragrostis tef61.9671.2592.11342forward
CNT30480842Setaria viridisArabidopsis halleri50.5457.2987.81279forward
CNT30363108Setaria viridisSorghum bicolor56.1638.7590.32310forward
CNT3031228Setaria viridisTheobroma cacao20.4745.5691.15113forward
CNT30120727Setaria viridisCitrus clementina57.6157.8290.57318forward
CNT30101083Setaria viridisOryza rufipogon58.5160.4994.12323forward
CNT30116111Setaria viridisOryza nivara58.5136.9195.36323forward
CNT30594327Setaria viridisEragrostis curvula51.4580.2391.9284forward

Expression of CNT30672934

Peptides detected in this lncRNA

>peptide 1 (44 aa)
MVIPLSRSALSLSSTHAYLKDRLFISAASFSNLSITRLSIPPSL*

>peptide 2 (72 aa)
SNGHRQNLSDIIASRHAKSRSGINHQTHHFFLAAALVTLAPVGSFFSTLLMTPTATVCLMSRTAKRPRGGYQ*

Sequence

>CNT30672934
AGCAATGGCCATAGACAAAACTTAAGTGATATTATAGCATCTAGGCATGCCAAAAGCAGAAGTGGAATCAACCACCAGACACATCATTTCTTCTTGGCTG
CAGCCTTAGTCACCTTGGCGCCCGTTGGGTCCTTCTTCTCCACGCTCTTGATGACTCCAACAGCAACCGTTTGCCTCATGTCACGGACAGCAAAACGACC
AAGAGGAGGGTACCAGTAATCATGTTCTTGATGAAGTCACGGTGTCCAGGGGCATCAATGACTGTGCAGTAGTACTTGGTGGTCTCGAACTTCCACAGGG
CGATATCAATGGTGATACCCCTCTCACGCTCAGCCTTGAGCTTGTCAAGCACCCACGCGTACTTGAAGGACCGCTTGTTCATCTCAGCGGCCTCCTTCTC
GAACCTCTCGATCACACGCTTGTCGATACCTCCAAGCTTGTAGATCAGGTGACCGGTGGTGGTCGACTTGCCGGAGTCGACGTGGCCAATGACCACGATG
TTGATGTGGGACTTCTCCTTACCCATGGTTGCAGGTGAGGCTTAAACTGCTG