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Detailed information on CNT30120727


BLAST search results

BLAST vs Swiss-Prot:
sp|Q41803|EF1A_MAIZE, E-value = 2e-103

BLAST vs NONCODE:
NONMEST004097, E-value = 2e-150

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30672934Citrus clementinaSetaria viridis57.8257.6190.57318forward
CNT30698284Citrus clementinaQuercus lobata24.5547.292.59135forward
CNT30629687Citrus clementinaVigna unguiculata29.828.389.02164forward
CNT30712097Citrus clementinaGlycine max61.0928.1684.82336forward
CNT30288144Citrus clementinaTriticum aestivum60.9190.5489.25335forward
CNT30224421Citrus clementinaHordeum vulgare46.3698.0891.37255forward
CNT30386294Citrus clementinaTriticum turgidum60.9191.0389.25335forward
CNT30590647Citrus clementinaMusa acuminata25.6445.1988.65141forward
CNT30233912Citrus clementinaBrassica oleracea39.6497.3291.28218forward
CNT30247994Citrus clementinaAvena sativa63.8223.7290.31351forward
CNT30658093Citrus clementinaTriticum dicoccoides64.5581.2489.01355forward
CNT30312075Citrus clementinaCamelina sativa38.5537.7289.15212forward
CNT30450104Citrus clementinaSaccharum spontaneum16.7322.0689.1392forward
CNT30218533Citrus clementinaKalanchoe fedtschenkoi20.1821.3586.49111forward
CNT3067093Citrus clementinaLeersia perrieri47.8258.8491.63263forward
CNT30646927Citrus clementinaRosa chinensis57.4594.0589.87316forward
CNT30721809Citrus clementinaTriticum spelta43.8215.9791.7241forward
CNT30480842Citrus clementinaArabidopsis halleri50.7357.2988.17279forward
CNT30363108Citrus clementinaSorghum bicolor62.554386.63344forward
CNT30355843Citrus clementinaLactuca sativa41.4527.0589.47228forward
CNT30483063Citrus clementinaChara braunii20.7350.4486.84114forward
CNT30704438Citrus clementinaPrunus avium23.4553.5391.47129forward
CNT30645139Citrus clementinaCannabis sativa42.7385.1491.49235forward
CNT3031228Citrus clementinaTheobroma cacao21.2747.1891.45117forward
CNT3024873Citrus clementinaPopulus trichocarpa29.8229.0892.68164forward
CNT30594327Citrus clementinaEragrostis curvula47.2773.4590.38260forward
CNT3039699Citrus clementinaMarchantia polymorpha23.4515.1684.5129forward

Expression of CNT30120727

Peptides detected in this lncRNA

>peptide 1 (48 aa)
HLVTAANHLLHTKGESKQSMLTSLTILGDTSFKTAGGGVNDEDGTVSL*

>peptide 2 (44 aa)
MVIPRSRSALSLSSTQAYLNDLLFISAASFSNLSITRLSIPPSL*

>peptide 3 (51 aa)
MMRTAQSACEIPASKPPVVESMMRTAQSACEVPVIMFLIKSRCPGASMTVQ*

>peptide 4 (42 aa)
MSGSINDGAVVLGGLELPQGNINGNTTFTLSLELVEHPGVFE*

>peptide 5 (41 aa)
MTSCSSQQLPSRTSRSHACQYHQACRSSVRWWSTFQSRHGR*

Sequence

>CNT30120727
CACCTTGTTACAGCAGCAAATCATCTGCTTCACACCAAGGGTGAAAGCAAGCAAAGCATGCTCACGAGTCTGACCATCCTTGGAGATACCAGCTTCAAAA
CCGCCGGTGGTGGAGTCAATGATGAGGACGGCACAGTCAGCCTGTGAGATACCAGCTTCAAAACCACCGGTGGTGGAGTCAATGATGAGGACGGCACAGT
CAGCCTGTGAGGTACCGGTAATCATGTTCTTGATAAAGTCACGATGTCCGGGAGCATCAATGACGGTGCAGTAGTACTTGGTGGTCTCGAACTTCCACAA
GGCAATATCAATGGTAATACCACGTTCACGCTCAGCCTTGAGCTTGTCGAGCACCCAGGCGTATTTGAATGACCTCTTGTTCATCTCAGCAGCTTCCTTC
TCGAACCTCTCGATCACACGCTTGTCAATACCACCAAGCTTGTAGATCAAGTGTCCGGTGGTGGTCGACTTTCCAGAGTCGACATGGCCGATGACCACAA
TGTTGATGTGAGTCTTCTCCTTACCCATTAGGCAAATCTAGAAAAAACCT