Detailed information on CNT30363108


BLAST search results

BLAST vs Swiss-Prot:
sp|P35450|EFGC_PEA, E-value = 4e-07

BLAST vs NONCODE:
NONCQUT004692, E-value = 2e-43

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30672934Sorghum bicolorSetaria viridis38.7556.1690.32310forward
CNT30546688Sorghum bicolorIpomoea triloba39.2573.0285.35314forward
CNT30195181Sorghum bicolorPisum sativum4270.8985.71336forward
CNT30160107Sorghum bicolorPistacia vera38.6269.1388.35309forward
CNT3093993Sorghum bicolorSolanum tuberosum43.2566.2886.71346forward
CNT30288144Sorghum bicolorTriticum aestivum4392.9790.12344forward
CNT30386294Sorghum bicolorTriticum turgidum42.2591.8590.24338forward
CNT30562819Sorghum bicolorActinidia chinensis41.1265.2885.41329forward
CNT30233912Sorghum bicolorBrassica oleracea2589.2988.5200forward
CNT30658093Sorghum bicolorTriticum dicoccoides4378.7290.12344forward
CNT30608684Sorghum bicolorGossypium raimondii43.2582.1985.55346forward
CNT3067093Sorghum bicolorLeersia perrieri33.2559.5191.73266forward
CNT30646927Sorghum bicolorRosa chinensis38.591.6787.66308forward
CNT30689637Sorghum bicolorTriticum urartu4335.2590.41344forward
CNT30721807Sorghum bicolorTriticum spelta31.3727.9292.83251forward
CNT30338600Sorghum bicolorEragrostis tef42.2570.4290.24338forward
CNT30480842Sorghum bicolorArabidopsis halleri33.555.0386.19268forward
CNT30645139Sorghum bicolorCannabis sativa28.3882.2589.43227forward
CNT3031228Sorghum bicolorTheobroma cacao11.8838.3189.4795forward
CNT30323623Sorghum bicolorAsparagus officinalis15.2539.186.07122forward
CNT30120727Sorghum bicolorCitrus clementina4362.5586.63344forward
CNT30101083Sorghum bicolorOryza rufipogon43.2564.7989.31346forward
CNT30116334Sorghum bicolorOryza nivara43.2556.7289.88346forward
CNT30594327Sorghum bicolorEragrostis curvula32.8874.2988.97263forward
CNT30726402Sorghum bicolorLupinus angustifolius4270.4485.71336forward

Expression of CNT30363108

Peptides detected in this lncRNA

>peptide 1 (98 aa)
MDMQDHHHFFLAAALVTLAPVGSLTATFLTLKPTLSPGSASCIDSWCISTDLTSVVRPVGPKVTTMPGLMSTAQSAWEVPVIMFLMKSRCPGASITVQ*

>peptide 2 (36 aa)
HGTPHRNIKHVTDKYYYNGRHIIMVGNHEHNRRHIL*

>peptide 3 (46 aa)
MSMVMPLSRSALSLSSTQAYLKDLLFISAASFSNLSMTRLSMPPSL*

>peptide 4 (35 aa)
MYIIQPARNQEPWICRIIIISSWQPPWSPWLPSGP*

Sequence

>CNT30363108
CATGGCACGCCTCATAGAAACATCAAACATGTCACTGATAAATACTATTATAATGGTAGGCATATTATAATGGTAGGCAATCACGAACACAACCGTCGAC
ACATACTGTAAAGACACTGAACCATCAAATTGTTCTTTTGTAACTACTACTAGCACCACCCAACAAAATAGGGACACTTATTTGACATGTATATAATCCA
ACCAGCAAGAAACCAGGAACCATGGATATGCAGGATCATCATCATTTCTTCTTGGCAGCCGCCTTGGTCACCTTGGCTCCCGTCGGGTCCTTGACCGCCA
CGTTCTTGACGTTGAAGCCGACGTTGTCGCCGGGAAGCGCCTCCTGCATCGACTCGTGGTGCATCTCCACCGACTTGACCTCCGTCGTCAGGCCCGTGGG
GCCAAAGGTGACCACCATGCCGGGCTTAATGAGCACCGCACAATCAGCCTGGGAGGTGCCGGTGATCATGTTCTTGATGAAGTCACGGTGCCCAGGAGCG
TCGATCACAGTGCAGTAGTACTTGGTGGTCTCAAACTTCCACAGGGCAATGTCAATGGTGATGCCCCTCTCGCGCTCGGCCTTGAGCTTGTCAAGCACCC
AGGCGTACTTGAAGGACCTCTTGTTCATCTCGGCAGCCTCCTTCTCAAACCTCTCGATGACACGCTTGTCGATGCCTCCAAGCTTGTAGATGAGGTGGCC
GGTGGTGGTGGACTTGCCGGAGTCAACATGACCAATGACCACAATGTTGATGTGAACCTTCTCCTTCCCCATGGCAACGGGACCAGCTGACTAGCTAGCT