Detailed information on CNT30117631


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30696704Oryza nivaraOryza sativa95.3695.6599.68308reverse complement
CNT30522415Oryza nivaraSetaria italica48.9247.1688.61158forward
CNT30727469Oryza nivaraCorchorus capsularis27.5529.2888.7689forward
CNT30561829Oryza nivaraActinidia chinensis30.6527.7385.8699forward
CNT3061108Oryza nivaraArabidopsis lyrata17.3424.4594.6456reverse complement
CNT30445279Oryza nivaraSaccharum spontaneum44.5824.6686.81144reverse complement
CNT30130300Oryza nivaraLolium perenne30.9634.691100reverse complement
CNT3015222Oryza nivaraZea mays27.2429.7392.0588forward
CNT30652801Oryza nivaraRosa chinensis24.4625.8288.6179forward
CNT30339268Oryza nivaraEragrostis tef88.5497.6184.27286forward
CNT30361740Oryza nivaraSorghum bicolor28.4830.1691.392forward
CNT30596965Oryza nivaraOryza meridionalis74.366.8594.58240forward
CNT30644641Oryza nivaraCannabis sativa26.0122.5889.2984forward
CNT30103689Oryza nivaraOryza rufipogon100.3183.0899.07324forward

Expression of CNT30117631

Peptides detected in this lncRNA

>peptide 1 (58 aa)
SPSQVALACHPSGGNKVVLDAWSFALGSAPVVCTMRPARSKLRSVCGAPGRRLERPCT*

>peptide 2 (45 aa)
MPGRLRLGLRLWFALCGPPVPSCVACVGRLGEGSSVPAPRVAGIA*

Sequence

>CNT30117631
TCGCCGAGCCAGGTAGCGTTGGCTTGTCACCCGAGCGGGGGCAATAAGGTGGTGTTGGATGCCTGGTCGTTTGCGCTTGGGTCTGCGCCTGTGGTTTGCA
CTATGCGGCCCGCCCGTTCCAAGTTGCGTAGCGTGTGTGGGGCGCCTGGGCGAAGGCTCGAGCGTCCCTGCACCTAGAGTGGCGGGTATTGCGTGAGGCT
GGTTTCACAGAGCAGCGAGTACCGCCCGCTTCCAACGGTGGAAGGATAACGGGCCGCTGCAGCCCTGGCCCGCTTCCGGCCCAAGTGCCTTCCATGGCAG
ACCACCACCTTTTTATTTTAGAA