Detailed information on CNT30403379


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30158948Beta vulgarisPistacia vera26.322.8288.8981reverse complement
CNT3092489Beta vulgarisSolanum tuberosum27.2728.2886.984forward
CNT30509042Beta vulgarisSolanum lycopersicum38.6438.8984.03119forward
CNT30172987Beta vulgarisTrifolium pratense19.8120.3390.1661forward
CNT3061108Beta vulgarisArabidopsis lyrata17.2123.1496.2353reverse complement
CNT30714740Beta vulgarisMalus domestica golden20.4520.4592.0663forward
CNT30706625Beta vulgarisPrunus avium25.654.1389.8779forward
CNT30644693Beta vulgarisCannabis sativa25.6524.4692.4179forward
CNT3058749Beta vulgarisAmborella trichopoda18.1820.5192.8656forward
CNT3026903Beta vulgarisPopulus trichocarpa24.0324.3491.8974forward
CNT30724440Beta vulgarisLupinus angustifolius24.6825.0886.8476forward

Expression of CNT30403379

Peptides detected in this lncRNA

>peptide 1 (66 aa)
MEHDRGLLGRVCGWLNAGSPYPSWELAHVAWAKVQVSWALKWRVLREAGFTEQRIPPTLVSGRRTG*

Sequence

>CNT30403379
GCCGAGCTAAGTAACATGAGCTTGTGACCCATGTGGGGGCAATAATGTGATGGAACATGATCGTGGCCTTCTGGGTCGGGTCTGTGGTTGGCTGAATGCT
GGCTCGCCCTATCCAAGTTGGGAGTTGGCTCATGTGGCTTGGGCGAAGGTCCAAGTTTCATGGGCCCTAAAGTGGAGGGTACTGCGTGAGGCTGGTTTCA
CAGAGCAACGAATACCTCCCACTCTTGTCAGTGGAAGGAGAACGGGCTAGTGCCTCCTTGGCCCATTAGTACCTAGTTGGCTGATATCTTAAATGGACCA
TCACTTTT