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Detailed information on CNT30103689


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30696704Oryza rufipogonOryza sativa79.2395.9699.03309reverse complement
CNT30522415Oryza rufipogonSetaria italica40.5147.1687.97158forward
CNT30727469Oryza rufipogonCorchorus capsularis21.2827.389.1683forward
CNT30382472Oryza rufipogonManihot esculenta20.2625.987.3479forward
CNT30561830Oryza rufipogonActinidia chinensis25.3832.4686.8799reverse complement
CNT3061108Oryza rufipogonArabidopsis lyrata14.3624.4594.6456reverse complement
CNT30262096Oryza rufipogonBrassica rapa17.1822.9589.5567forward
CNT30130300Oryza rufipogonLolium perenne25.6434.690100reverse complement
CNT3015222Oryza rufipogonZea mays22.5629.7393.1888forward
CNT30652801Oryza rufipogonRosa chinensis20.2625.8288.6179forward
CNT30339268Oryza rufipogonEragrostis tef73.5997.9583.62287forward
CNT30479039Oryza rufipogonArabidopsis halleri20.2625.8287.3479forward
CNT30361740Oryza rufipogonSorghum bicolor23.5930.1690.2292forward
CNT30596965Oryza rufipogonOryza meridionalis59.7464.995.28233forward
CNT30644641Oryza rufipogonCannabis sativa21.2822.3189.1683forward
CNT30117631Oryza rufipogonOryza nivara79.4995.9899.35310forward

Expression of CNT30103689

Peptides detected in this lncRNA

>peptide 1 (45 aa)
MPGRLRLGLRLWFALCGPPVPSCVACVGRLGEGSSVPAPRVAGIA*

>peptide 2 (45 aa)
ADSPSQVALACHPSGGNKVVFGCLVVCAWVCACGLHYAARPFQVA*

Sequence

>CNT30103689
GCTGACTCGCCGAGCCAGGTAGCGTTGGCTTGTCACCCGAGCGGGGGCAATAAGGTGGTGTTTGGATGCCTGGTCGTTTGCGCTTGGGTCTGCGCCTGTG
GTTTGCACTATGCGGCCCGCCCGTTCCAAGTTGCGTAGCGTGTGTGGGGCGCCTGGGCGAAGGCTCGAGCGTCCCTGCACCTAGAGTGGCGGGTATTGCG
TGAGGCTGGTTTCACAGAGCAGCGAGTACCGCCCGCTTCCAACGGTGGAAGGATAACGGGCCACTGCAGCCCTGGCCCGCTTCCGGCCCAAGTGCCTTCC
ATGGCAGACCACCACCTTTTTTTTTTAGAAAAAAGTACACCAAAGGTCCCTCACCTTTTTTTTTAGAAAAAAGTACACCAAAGGTCCCTC