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Detailed information on CNT30652801


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30696704Rosa chinensisOryza sativa25.8224.5388.6179reverse complement
CNT30316252Rosa chinensisCorylus avellana37.9132.7790.52116reverse complement
CNT30547454Rosa chinensisIpomoea triloba29.0827.1386.5289forward
CNT30515285Rosa chinensisJuglans regia51.962188.68159forward
CNT30698009Rosa chinensisQuercus lobata44.4443.7388.24136reverse complement
CNT30377398Rosa chinensisArabidopsis thaliana23.219.2488.7371forward
CNT30499557Rosa chinensisCoffea canephora45.4245.2885.61139reverse complement
CNT30618136Rosa chinensisSesamum indicum53.5928.8285.98164reverse complement
CNT3070907Rosa chinensisQuercus suber35.6234.0687.16109reverse complement
CNT30381728Rosa chinensisManihot esculenta25.162594.8177forward
CNT30404033Rosa chinensisBeta vulgaris32.3532.0489.999forward
CNT30526769Rosa chinensisPhaseolus vulgaris24.8425.8590.7976forward
CNT30507384Rosa chinensisNicotiana attenuata28.128.289.5386forward
CNT30711674Rosa chinensisGlycine max29.4129.6188.8990forward
CNT3043300Rosa chinensisPrunus dulcis69.6169.3884.98213forward
CNT30158859Rosa chinensisPistacia vera39.2241.8186.67120reverse complement
CNT30634223Rosa chinensisCapsicum annuum24.5125.688875reverse complement
CNT30561829Rosa chinensisActinidia chinensis31.727.1789.6997forward
CNT30544156Rosa chinensisBrassica napus25.1625.4190.9177forward
CNT30235645Rosa chinensisBrassica oleracea23.223.1391.5571forward
CNT30509042Rosa chinensisSolanum lycopersicum25.4925.4989.7478forward
CNT30171787Rosa chinensisTrifolium pratense24.8425.1788.1676forward
CNT3061108Rosa chinensisArabidopsis lyrata31.3741.9290.6296reverse complement
CNT3076575Rosa chinensisBrassica juncea30.7229.9486.1794forward
CNT30261746Rosa chinensisBrassica rapa35.6246.3887.16109forward
CNT30612154Rosa chinensisArabis alpina25.1625.3389.6177reverse complement
CNT30128358Rosa chinensisCorymbia citriodora35.9539.8687.27110reverse complement
CNT30716661Rosa chinensisMalus domestica golden52.2951.6188.12160forward
CNT30479039Rosa chinensisArabidopsis halleri38.5638.5688.14118forward
CNT30572433Rosa chinensisVitis vinifera27.4515.2588.184reverse complement
CNT30706625Rosa chinensisPrunus avium49.357.8988.74151forward
CNT30644641Rosa chinensisCannabis sativa33.9927.9690.38104forward
CNT3029804Rosa chinensisTheobroma cacao34.3134.289.52105forward
CNT3058191Rosa chinensisAmborella trichopoda25.1625.0890.9177forward
CNT30120686Rosa chinensisCitrus clementina36.9337.5487.61113reverse complement
CNT30103689Rosa chinensisOryza rufipogon25.8220.2688.6179forward
CNT30117631Rosa chinensisOryza nivara25.8224.4688.6179forward

Expression of CNT30652801

Peptides detected in this lncRNA

>peptide 1 (46 aa)
PSLVTPAYNPSGGIKVLKHWLCASRSGSVWLNTVPPVPSGELGYVV*

>peptide 2 (57 aa)
MWFERRLWVSWFLEWRVLREAGFTEQRLPPAPCSGRITGRCLPDPPWPARPCQSDLHF

Sequence

>CNT30652801
GCCGAGCTTGGTAACGCCAGCTTATAACCCGAGTGGGGGCATCAAAGTGTTGAAACATTGGCTTTGCGCTAGCCGGTCGGGTTCGGTTTGGCTTAATACT
GTCCCGCCCGTTCCAAGCGGAGAGTTGGGCTATGTGGTTTGAGCGAAGGCTCTGGGTCTCATGGTTCTTAGAGTGGAGGGTACTGCGTGAGGCTGGTTTC
ACAGAGCAGCGACTACCTCCCGCTCCTTGCAGTGGAAGGATAACGGGTCGGTGCCTCCCGGATCCACCATGGCCCGCTAGACCCTGCCAATCGGACCTAC
ACTTTT