Detailed information on CNT3081743


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30607765Brassica junceaGossypium raimondii23.5719.1384.38128forward

Expression of CNT3081743

Peptides detected in this lncRNA

>peptide 1 (31 aa)
MSLQVESHRFGTREEQCLLESDRPFLESQVQ*

>peptide 2 (33 aa)
MIISVELEAGQDIVDGEHRQSTVLDLLEFQLLH*

>peptide 3 (34 aa)
MAIDIVISYKRRICLHRVLQHKEAGGTKEKETRL*

>peptide 4 (39 aa)
MFTQGVTTQRSWWYQRERNKIVGYMRMGYQHKTPWDDMI*

>peptide 5 (40 aa)
MASIASLPFLTSLSFNSFIDFSSFPNPRGLKKDPRSIVYP*

>peptide 6 (49 aa)
PRSCSLWPLTLSFLTKDEYVYTGCYNTKKLVVPKRKKQDCRIHENGIPT*

Sequence

>CNT3081743
ATCCTAGAAGCTGTTCTTTATGGCCATTGACATTGTCATTTCTTACAAAAGACGAATATGTTTACACAGGGTGTTACAACACAAAGAAGCTGGTGGTACC
AAAGAGAAAGAAACAAGATTGTAGGATACATGAGAATGGGATACCAACATAAAACACCATGGGATGATATGATATGATCATCTCAGTGGAACTTGAGGCT
GGTCAAGACATTGTTGATGGCGAGCATCGCCAGTCTACCGTTCTTGACCTCCTTGAGTTTCAACTCCTTCATTGACTTCTCGTCTTTTCCAAACCCAAGA
GGGTTGAAGAAAGACCCAAGAAGTATTGTTTACCCATAGATCCTGGGTTGTACCAGTCCTGCAACCTCCTGTGCTCGGCAAATCCCATCAAAGCCATCTC
GAGAACAAAGAGTGTGTAAGGGTCTGCCCAGTAGCTGTATGTCCCTGCAGGTGGAATCACACCGGTTTGGAACCAGGGAAGAGCAGTGTCTGCTGGAATC
AGACCGGCCTTTCCTAGAATCTCAGGTGCAATAGCTCCAGCTG