Detailed information on CNT30521445


BLAST search results

BLAST vs Swiss-Prot:
sp|Q5Z6F0|TIP22_ORYSJ, E-value = 3e-76

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30673906Setaria italicaSetaria viridis45.2365.2999.76412forward
CNT30223457Setaria italicaHordeum vulgare17.1252.3591.03156forward
CNT30397893Setaria italicaTriticum turgidum22.0631.5596.02201forward
CNT30589165Setaria italicaMusa acuminata22.7245.290.34207forward
CNT30443527Setaria italicaAegilops tauschii48.5280.6692.08442forward
CNT30254829Setaria italicaAvena sativa44.6857.493.12407forward
CNT30229576Setaria italicaAnanas comosus18.3323.4685.63167forward
CNT3066802Setaria italicaLeersia perrieri15.8160.7690.28144forward
CNT30352270Setaria italicaEragrostis tef14.4940.7494.7132forward
CNT30364799Setaria italicaSorghum bicolor17.4520.8992.45159forward
CNT30596416Setaria italicaOryza meridionalis12.7325.5593.97116forward
CNT30370576Setaria italicaOryza glumipatula11.8620.9396.3108forward
CNT3057357Setaria italicaAmborella trichopoda18.6626.9481.18170forward
CNT30321600Setaria italicaAsparagus officinalis5.9326.3490.7454forward
CNT30101968Setaria italicaOryza rufipogon46.155.2694.29420forward
CNT30583094Setaria italicaEchinochloa crusgalli15.3769.6597.14140forward
CNT30117062Setaria italicaOryza nivara7.1428.2610065forward

Expression of CNT30521445

Peptides detected in this lncRNA

>peptide 1 (43 aa)
MANQSSKRTHTASGALIRTKQRHAAMDAAHHSLNLTLCGQHYD*

>peptide 2 (59 aa)
MLVKSPLATAGPKERAGFMDPPEKGPATRMLAPTMKPMAMGAMVPREPFLGSAAVAYTV*

>peptide 3 (61 aa)
MRPTLRLRETKQQCTATVTRRALRSRCWRRGRGRRTCRCTGRRCRRGLRRQAGRPSRSRCW*

>peptide 4 (94 aa)
MLAPMATATNSPNPWHTATATRPAASRGAPPLNLAATIHRYGDSGADAGEDEDEGGDELGDVGLEGGRAEGVIEAAEGDVARHGGGGREGRGAD*

Sequence

>CNT30521445
AATAAATTAAAAAGTCAACGGAAGCGCACTGGTTCTTGAACCCCACCAACTTCACACTCACCACATTACAGAAAAGGAGGAAATTGAGAAATAAACATGG
CCAACCAATCATCCAAGCGCACGCACACAGCCTCCGGGGCTTTGATCCGAACCAAACAACGACATGCTGCAATGGATGCTGCTCATCACAGCCTGAATCT
CACTTTATGCGGCCAACACTACGATTGAGAGAAACCAAACAACAATGCACGGCGACGGTCACTCGGCGCGCGCTTAGAAGTCGCTGCTGGCGACGGGGGC
GTGGTCGCCGCACATGTAGATGTACCGGTAGACGATGCCGGCGAGGCCTCCGCCGACAAGCGGGCCGACCCAGTAGATCCAGATGTTGGTGAAGTCGCCG
CTGGCCACGGCGGGGCCGAAGGAGCGGGCCGGGTTCATGGACCCGCCGGAGAAGGGGCCGGCGACGAGGATGTTGGCGCCGACGATGAAGCCGATGGCGA
TGGGCGCGATGGTGCCGAGGGAGCCCTTCTTGGGGTCGGCCGCGGTGGCGTACACGGTGTAGACGAGGCCGAAGGTGACGGCGGGGTTCACGTGGCCGCC
GGAGATGTTGGCGCCGATGGCGACCGCGACGAACAGCCCGAACCCGTGGCACACCGCCACGGCGACCAGGCCGGCCGCGTCAAGAGGCGCGCCGCCGCTC
AACTTGGCTGCAACGATCCACCGATACGGCGATAGCGGAGCCGACGCCGGCGAAGACGAAGACGAGGGTGGAGATGAACTCGGCGACGTAGGCCTTGAGG
GAGGCCGCGCTGAAGGAGTCATCGAAGCGGCCGAAGGCGATGTTGCCCGACATGGTGGCGGTGGCAGGGAAGGGCGAGGAGCTGACTGACCAAGGGGATA
GGAGCTGCGAT