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Detailed information on CNT30370576


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30674161Oryza glumipatulaSetaria viridis18.637.893.7596forward
CNT30521445Oryza glumipatulaSetaria italica20.9311.8696.3108forward

Expression of CNT30370576

Peptides detected in this lncRNA

>peptide 1 (29 aa)
MAKWVIRTRCWQRGRGRRTCRRTGRRGRR*

>peptide 2 (36 aa)
RNNFISDFLFARRRQAYFGGYKQTEMTWPESNEISQ*

Sequence

>CNT30370576
CGGAACAATTTTATTTCTGATTTCCTATTTGCGAGGAGAAGACAAGCTTATTTTGGAGGCTACAAACAAACTGAAATGACATGGCCCGAATCAAATGAAA
TCTCACAATGAAACTCAACAGAAGTGTTCGATCTTAAACATGCATCTCATCCAACTTGCTCCACACTGATCACATTACAAATTAATCAAGAAGAAACTAA
ACATGGATCGATCATCACCCAAGTGTCACATCCTCGCAACAAAAGCCTTCTTCCCCATCTGAACCAAATCAATCCTTCACAACACATCCTCACAAGATTC
TGACGATGGAGTGACCACCATTTTTATGCGTGTTGCCGATGGCGAAATGGGTAATTAGAACTCGCTGCTGGCAACGGGGGCGTGGTCGCCGCACATGTAG
ACGTACCGGTAGACGAGGCCGAAGGTGACGGCCGGGTTGACGTGGCCGCCGGAGATGTTGGCGCCGATGGCCACCGCCACGAACAGCCCGAACCCGTGGC
ACACCGCCACGGCGAC