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Detailed information on CNT30583094


BLAST search results

BLAST vs Swiss-Prot:
sp|Q5Z6F0|TIP22_ORYSJ, E-value = 2e-19

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30673713Echinochloa crusgalliSetaria viridis63.1826.6296.06127forward
CNT30521445Echinochloa crusgalliSetaria italica69.6515.3797.14140forward
CNT30291489Echinochloa crusgalliTriticum aestivum21.3910.0993.0243forward
CNT30225308Echinochloa crusgalliHordeum vulgare23.8816.7891.6748forward
CNT30395407Echinochloa crusgalliTriticum turgidum38.8132.7785.978forward
CNT30554065Echinochloa crusgalliOryza glaberrima60.730.4298.36122forward
CNT30682902Echinochloa crusgalliTriticum urartu21.3910.1993.0243forward
CNT30352270Echinochloa crusgalliEragrostis tef62.6938.8993.65126forward
CNT30370505Echinochloa crusgalliOryza glumipatula45.7717.1398.9192forward
CNT30706773Echinochloa crusgalliPrunus avium25.378.2390.251forward
CNT30321600Echinochloa crusgalliAsparagus officinalis26.8726.3492.5954forward
CNT30117062Echinochloa crusgalliOryza nivara32.3428.2698.4665forward

Expression of CNT30583094

Peptides detected in this lncRNA

>peptide 1 (53 aa)
GGADAGEDEEEGGDELGDVGLEGGRAEGVIEAAEGNVARHGGDGRGGLPERTD*

Sequence

>CNT30583094
GGCGGAGCCGACGCCGGCGAAGACGAAGAGGAGGGTGGAGATGAACTCGGCGACGTAGGCCTTGAGGGAGGCCGCGCTGAAGGAGTCATCGAAGCGGCCG
AAGGCAATGTTGCCCGACATGGTGGCGATGGCAGGGGAGGGTTGCCGGAGCGAACTGACTGACAGGGGATAGCAACTGCGGTTGTAGCCACTCGCTGAGA
A