Detailed information on CNT30589165


BLAST search results

BLAST vs Swiss-Prot:
sp|Q41975|TIP22_ARATH, E-value = 9e-44

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30673906Musa acuminataSetaria viridis45.6333.1289.95209forward
CNT30521445Musa acuminataSetaria italica45.222.7290.34207forward
CNT30618329Musa acuminataSesamum indicum29.2610.8781.34134forward
CNT30727261Musa acuminataCorchorus capsularis41.9234.4780.21192forward
CNT30397893Musa acuminataTriticum turgidum44.5432.0389.71204forward
CNT30552658Musa acuminataOryza glaberrima41.728.3890.05191forward
CNT30443527Musa acuminataAegilops tauschii45.237.7788.41207forward
CNT30256642Musa acuminataAvena sativa48.6943.391.03223forward
CNT3066802Musa acuminataLeersia perrieri30.1358.2385.51138forward
CNT30364799Musa acuminataSorghum bicolor38.8623.3989.33178forward
CNT30596416Musa acuminataOryza meridionalis28.1728.4190.7129forward
CNT30644098Musa acuminataCannabis sativa26.8643.9383.74123forward
CNT3022241Musa acuminataPopulus trichocarpa35.1516.5581.37161forward
CNT30101968Musa acuminataOryza rufipogon45.227.2489.37207forward
CNT30576681Musa acuminataOryza barthii29.6923.4191.18136forward

Expression of CNT30589165

Peptides detected in this lncRNA

>peptide 1 (54 aa)
MLAPTMKPMAIGAMVPREPFFGSAAVAYTVYTRAKVMMISITTPSPAPTPAPSP*

>peptide 2 (61 aa)
DKTLTSKKKTVEILKRLDAIHKEMSFELQRYKASHTIATRRHCSLLFCRAYESLRKWLVVV*

Sequence

>CNT30589165
GATAAAACATTGACTTCAAAGAAGAAAACAGTGGAGATACTAAAAAGACTCGATGCAATACACAAGGAAATGAGCTTCGAACTTCAAAGATACAAAGCAA
GTCACACCATCGCAACAAGACGACACTGTTCACTCTTATTCTGCAGGGCTTACGAGTCACTGCGGAAGTGGCTGGTGGTCGTGTAACAAGTAGATCCAGA
GGTCGGAGAAGTCCCCGCTAGCGACGGCGGGCCCGAAGGAGCGAGCCGGGTTCATCGACCCGCCGGAGAAGGGGCCGGCGGCGAGGATGTTGGCGCCGAC
GATGAAGCCGATGGCGATCGGGGCGATGGTGCCGAGGGAGCCCTTCTTCGGGTCGGCTGCCGTCGCGTACACCGTGTACACCAGGGCGAAGGTGATGATG
ATCTCCATCACCACCCCTTCTCCTGCTCCCACTCCTGCTCCCAGTCCATGAGTGGGGG