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Detailed information on CNT3057357


BLAST search results

BLAST vs Swiss-Prot:
sp|P50156|TIP11_ORYSJ, E-value = 5e-63

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30521445Amborella trichopodaSetaria italica26.9418.6681.18170forward
CNT30568703Amborella trichopodaActinidia chinensis23.618.9980.54149forward
CNT30612709Amborella trichopodaArabis alpina20.7612.3182.44131forward
CNT30114821Amborella trichopodaEutrema salsugineum23.1413.9783.56146forward

Expression of CNT3057357

Peptides detected in this lncRNA

>peptide 1 (68 aa)
MSGPAQYTQWESHDQLTTAGPKETAGFMEAPVKAPPAKMLAPTMKPIAIGAIIPRLPFFGSIAVAYTV*

>peptide 2 (70 aa)
NKSEREEEEAPLQQYKTQRNKRRKKSIDGDLVVGGGELLVGVRDEYSLVNKPCEATTDEWSSPVHPVGVP*

>peptide 3 (31 aa)
ETKANEKKKKHHCNNTKHREIKEERKALMGT*

>peptide 4 (36 aa)
MSQQGSHVHRKYSLRPTQRQIVRRRAPTTPQRAPPAW

>peptide 5 (45 aa)
MLPPTKAPNVTAGFTCPPEIFAPTDTATNSPKACANDAATSPAGVV

Sequence

>CNT3057357
GAAACAAAAGCGAACGAGAAGAAGAAGAAGCACCACTGCAACAATACAAAACACAGAGAAATAAAAGAAGAAAGAAAAGCATTGATGGGGACCTAGTAGT
CGGTGGTGGGGAGTTGCTCGTGGGTGTGAGAGATGAATACAGTCTCGTAAATAAGCCCTGCGAGGCCACCACCGATGAGTGGTCCAGCCCAGTACACCCA
GTGGGAGTCCCATGACCAGCTCACGACGGCGGGGCCGAAGGAGACCGCGGGGTTCATGGAGGCACCGGTGAAGGCGCCACCGGCCAAGATGTTAGCCCCT
ACGATGAAACCGATCGCGATCGGTGCGATTATACCAAGGCTGCCCTTCTTTGGGTCGATTGCGGTGGCGTACACAGTGTAGACGAGGCCGAAGGTCATAA
CGATCTCAAACACGAATGCGTTCCAAACGGAGACACCCGACAAGCCGAAGGCGGAGCTGGGCGATCCAGTAAAGGATTCCGCGGAGCAGAGTGATGTTGC
CGCCCACAAAGGCACCAAATGTCACAGCAGGGTTCACATGTCCACCGGAAATATTCGCTCCGACCGACACAGCGACAAATAGTCCGAAGGCGTGCGCCAA
CGACGCCGCAACGAGCCCCGCCGGCGTGGTG