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Detailed information on CNT3049028


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30695659Cucumis sativusOryza sativa60.3420.8390.86175forward
CNT30677883Cucumis sativusSetaria viridis60.3411.7391.43175forward
CNT30617775Cucumis sativusSesamum indicum6026.2894.83174forward
CNT30730546Cucumis sativusCorchorus capsularis33.7916.5898.9898forward
CNT30198866Cucumis sativusPisum sativum62.7655.8394.51182forward
CNT30300194Cucumis sativusTriticum aestivum60.348.3291.43175forward
CNT30384007Cucumis sativusTriticum turgidum41.0313.6391.6119forward
CNT30569656Cucumis sativusActinidia chinensis54.4818.7696.2158forward
CNT30543269Cucumis sativusBrassica napus63.16.1897.81183forward
CNT30598987Cucumis sativusFraxinus excelsior33.13.2396.8896forward
CNT30136937Cucumis sativusLolium perenne60.3427.6990.86175forward
CNT3017926Cucumis sativusZea mays60.3445.8191.43175forward
CNT30607385Cucumis sativusGossypium raimondii61.3816.8687.08178forward
CNT30153780Cucumis sativusPrunus persica62.7620.3496.7182forward
CNT30331679Cucumis sativusDioscorea rotundata58.2824.6797.04169forward
CNT30150659Cucumis sativusBrachypodium distachyon29.3136.3289.4185forward
CNT30115844Cucumis sativusOryza nivara60.3420.0990.86175forward

Expression of CNT3049028

Peptides detected in this lncRNA

>peptide 1 (34 aa)
KIWSGKGTERKGYVISSTNYTSIVVNCYSRHSFK*

>peptide 2 (49 aa)
MASPLPLAASTNSELNLKAIFRPGRFRDAPNNQRMASAFPCVDPISMGT*

Sequence

>CNT3049028
CGAAAATATGGAGTGGCAAAGGAACTGAAAGAAAAGGTTATGTAATTTCTTCTACAAACTATACAAGTATCGTTGTTAATTGTTATTCTCGTCATTCATT
CAAATAGATTCTATGAGTCTCTTCCTTTTTACGTATGGCATCGCCACTCCCTTTGGCAGCATCCACTAATTCGGAACTGAATTTGAAAGCCATATTTCGA
CCGGGACGTTTTCGGGATGCCCCTAATAACCAACGAATGGCAAGTGCTTTTCCTTGTGTGGATCCTATTTCAATGGGAACTTGATGAGTT