« Back to Actinidia chinensis search


Detailed information on CNT30569656


BLAST search results

BLAST vs Swiss-Prot:
sp|Q6EM56|RR7_STEPS, E-value = 7e-84

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30695659Actinidia chinensisOryza sativa54.875591.13462forward
CNT30678391Actinidia chinensisSetaria viridis45.3760.8393.19382forward
CNT30617775Actinidia chinensisSesamum indicum52.7367.0792.57444forward
CNT3021516Actinidia chinensisCitrullus lanatus41.8119.1497.44352forward
CNT30730546Actinidia chinensisCorchorus capsularis70.67100.6896.13595forward
CNT30406883Actinidia chinensisBeta vulgaris30.499.6189.06256forward
CNT30524944Actinidia chinensisPhaseolus vulgaris20.3117.1795.32171forward
CNT30201818Actinidia chinensisPisum sativum91.5755.9989.11771forward
CNT30710142Actinidia chinensisGlycine max19.9537.6794.05168forward
CNT30284960Actinidia chinensisTriticum aestivum90.9786.2691.38766forward
CNT30384007Actinidia chinensisTriticum turgidum97.8694.3990.9824forward
CNT3083498Actinidia chinensisVigna radiata11.7642.6792.9399reverse complement
CNT30543269Actinidia chinensisBrassica napus10028.4596.44842forward
CNT30509374Actinidia chinensisSolanum lycopersicum23.9910191.09202forward
CNT30136937Actinidia chinensisLolium perenne50.8367.7290.19428forward
CNT3018194Actinidia chinensisZea mays41.6959.994.59351forward
CNT30610163Actinidia chinensisGossypium raimondii17.2227.2694.48145forward
CNT30230544Actinidia chinensisAnanas comosus22.5739.1893.16190reverse complement
CNT30213923Actinidia chinensisHelianthus annuus14.4923.3395.9122reverse complement
CNT30684722Actinidia chinensisTriticum urartu27.0821.3793.86228forward
CNT30351849Actinidia chinensisEragrostis tef10.121.3690.5985reverse complement
CNT30356947Actinidia chinensisLactuca sativa55.792.8797.65469forward
CNT30153780Actinidia chinensisPrunus persica33.8531.8494.74285forward
CNT30416238Actinidia chinensisPapaver somniferum39.943.8697.62336forward
CNT30324879Actinidia chinensisAsparagus officinalis13.0631.3497.27110reverse complement
CNT30331679Actinidia chinensisDioscorea rotundata80.0598.3995.55674forward
CNT30150659Actinidia chinensisBrachypodium distachyon26.2594.4482.81221forward
CNT30100515Actinidia chinensisOryza rufipogon10.9336.2290.2292reverse complement
CNT30115844Actinidia chinensisOryza nivara57.4855.5790.91484forward
CNT30604848Actinidia chinensisOryza punctata10.4526.9192.0588reverse complement
CNT3049028Actinidia chinensisCucumis sativus18.7654.4896.2158forward

Expression of CNT30569656

Peptides detected in this lncRNA

>peptide 1 (65 aa)
MPLITNEWQVLFLVWILFQWELAESIHLHVLLLLLYRELLYVLLDVKQIVDLFLSFVESFSWLDR*

>peptide 2 (52 aa)
LRMASPLPLAASTNSELNLKAIFRPGRFRDAANNQRMASAFPCVDPISMGTC*

Sequence

>CNT30569656
TTGCGTATGGCCTCGCCCCTCCCTTTGGCAGCATCCACTAATTCGGAACTTAATTTGAAAGCCATATTTCGACCCGGACGTTTTCGGGATGCCGCTAATA
ACCAACGAATGGCAAGTGCTTTTCCTTGTGTGGATCCTATTTCAATGGGAACTTGCTGAGTCGATCCACTTACACGTCTTGCTTTTACTCCTATATCGGG
AGTTACTCTACGTATTGCTTGACGTAAAACAGATAGTGGATTTGTTTCTGTCTTTTGTTGAATCTTTTTCATGGCTCGATAGATAATTTGATAAGCCAAT
GATTTTTTTCCGTGTTTCAGAATACCGTTAACCAACATATTAACTAATCGATTACGATAAATTGGATCAGATTTTGCAGTTTTTTCTTTTGCAGTACCTC
GACGTGACATGAGCGTGAAAGAGGTTCAAGAATCCGTTTTCTTTTTATAAGGGCTAAAATCACTTATTTTGGCTTTTTTACCCCATATTGTAGGAACGCC
CTTTTTGACGATCCTTTACTCCGACAGCATCTAGGGTTCCTCGAACAATGTGATATCTCACACCGGGTAAATCCTTAACCCTTCCCCTCTTACTAAGACT
ACAGAATGTTCTTGTGAATTATGGCCAATACCAGGTATATAAGCAGTGATTTCAAATCCAGAGGTTAATCGTACTCTGGCAACTTTACGTAAGGCAGAGT
TTGGTTTTTGGGGTGATAGTGGAAAAGTTGACAGATAAGTCACCCTTACTGCCACTCTACAGAACCGTACATGAGATTTTCACCTCATACGGCTCCTCGT
TCAATTCTTTCGAAGTCATTGGATCCTTTTCCTCGTTCGAGA