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Detailed information on CNT30677883


BLAST search results

BLAST vs Swiss-Prot:
sp|A8Y9D1|RR7_LOLPR, E-value = 8e-91

BLAST vs NONCODE:
NONOSAT000698, E-value = 0.0

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30695659Setaria viridisOryza sativa35.7263.4599.44533forward
CNT30617775Setaria viridisSesamum indicum30.5668.8887.28456forward
CNT3021516Setaria viridisCitrullus lanatus54.5644.2694.96814forward
CNT30524944Setaria viridisPhaseolus vulgaris42.964.2691.88640forward
CNT30198866Setaria viridisPisum sativum15.3570.2589.96229forward
CNT30136937Setaria viridisLolium perenne35.7284.3496.44533forward
CNT3018230Setaria viridisZea mays30.5663.0799.34456forward
CNT30153780Setaria viridisPrunus persica27.9546.5988.25417forward
CNT30150659Setaria viridisBrachypodium distachyon14.8194.4492.31221forward
CNT30578120Setaria viridisOryza barthii30.0377.7898.66448forward
CNT30115844Setaria viridisOryza nivara35.7261.1999.44533forward
CNT30603929Setaria viridisOryza punctata11.0641.3598.18165reverse complement
CNT30726897Setaria viridisLupinus angustifolius27.3587.1885.78408reverse complement
CNT3049028Setaria viridisCucumis sativus11.7360.3491.43175forward

Expression of CNT30677883

Peptides detected in this lncRNA

>peptide 1 (31 aa)
MRYLTPGKSLTLPPLTNTTECSCKLWPIPGI*

>peptide 2 (39 aa)
MISVFSFFSFLFVSKKISSDSPSIDSFPIEMYGSMCLHT*

>peptide 3 (51 aa)
MDPCVYIPRFCSWINENAQELYLPLPFYESLPFCVWHPHSLWQHLLIRNLI*

>peptide 4 (72 aa)
MAPPLPLAASTNSELNLKAIFRPGRFWDASNNQRMASALPCLDPISIGTFRVDPFLLRLVFTPILGVTLRIA*

>peptide 5 (29 aa)
MRKSSICLCHSMSRFLFAYGTPTPFGSIY*

Sequence

>CNT30677883
CATAAGATTCCTCTTTCTTATTCTTAAGCAAGCCCCCGAGAGGGCTTAGTTGATCATGATTTCTGTTTTCTCTTTCTTTTCCTTTTTATTTGTTTCGAAA
AAGATATCGTCCGATTCTCCTTCTATTGATTCTTTTCCGATCGAGATGTATGGATCCATGTGTCTACATACCTAGATTCTGTTCATGGATTAACGAAAAT
GCGCAAGAGCTCTATTTGCCTCTGCCATTCTATGAGTCGCTTCCTTTTTGCGTATGGCACCCCCACTCCCTTTGGCAGCATCTACTAATTCGGAACTTAA
TTTGAAAGCCATATTTCGACCCGGACGCTTTTGGGATGCTTCTAATAACCAACGAATGGCAAGTGCTCTTCCTTGTTTAGATCCTATTTCAATCGGAACT
TTCCGCGTCGATCCTTTTTTATTACGTCTTGTTTTTACTCCTATATTGGGAGTTACTCTACGTATTGCTTGACGTAAAACCAATAGTGGATTTGTTTCTG
TCTTTTGTTGAATCTTTTTCACGGCTCGATAGAGAATTTGATAAGCCAATGATTTTTTTCCGTCTTTCATAATACGGTTAACCACCATGTTAACTAATCG
ATTACGAAAAATTGGATCGGATTTTGCGGTTCAAGAATCCGTTTTCTTTTTATAAGGGCTAAAAACGAATCACTTATTTTTTTGGCTTTTTGACCCCATA
TTGTAGGGTGGATCTCGAAAGATAGGAAAGATCTCCCTCCAAGCCGTACATACGACTTTCATCGAATACGGCTTTCCACAGAATTCTATAGGGATCTATG
AGATCGAGTATGGAATTCTGTTTACTCACTTTAAATTGAGTATCCGTTTCCCTCCTTTTCCCGCTAGGATCGGAAATCCTGTATTTTCCATATCCATACG
ATCGAGTCCTTAGGTTTCCGAAATAGTGTAATGGAAAAAGAAGTGCTTCGAATCATTGCTATTTGACTCGGACCTGTTCTGAAAAAGTCGAGGTATTTCG
AATTGTTTGTTGACACGGACAAAGTAAGGGAAAACCTCTGAAAGAATTTCCATATTGACCTTGGACATATAAGAGTTCCGAATCGAATCTCTTTAGAAAG
AAGATCTTTTGTCTCATGGTAGCCTGCTCCAGTCCCCTTACGAAACTTTCGTTATTGGGTTAGCCATACACTTCACATGTTTCTAGCGATTCACATGGCA
TCATCAAATGATACAAGTCTTGGATAAGAATCTACAACGCACTAGAACGCCCTTGTTGACGATTCTTTACTGCGACAGCATCTAGGGTTCCTCGAATAAT
GCGATATCTCACACCGGGTAAATCCTTAACCCTTCCTCCTCTTACTAATACTACAGAATGTTCTTGTAAATTATGGCCAATACCAGGTATATAAGCAGTG
ATTTCAAATCCAGAGGTTAATCGTACTCTGGCAACTTTACGTAAGGCAGAGTTGGGTTTTTTGGGGTTGATAGTGGAAAAGTCGACAGATAA