CANTATAdb - search

« Back to Corchorus capsularis search

Detailed information on CNT30730546

BLAST search results

BLAST vs Swiss-Prot:
sp|P61842|RR7_BRANA, E-value = 4e-74

BLAST vs NONCODE:
NONOSAT000698, E-value = 1e-133

Results of reciprocal BLAST search (potential orthologs)

Target	Query species	Target species	Query coverage (%)	Target coverage (%)	Identity	Alignment length (nt)	Orientation
CNT30695659	Corchorus capsularis	Oryza sativa	67.51	47.5	90.98	399	forward
CNT30678391	Corchorus capsularis	Setaria viridis	58.54	55.1	91.62	346	forward
CNT30617775	Corchorus capsularis	Sesamum indicum	64.47	57.55	92.39	381	forward
CNT30406883	Corchorus capsularis	Beta vulgaris	43.32	99.61	89.84	256	forward
CNT30524944	Corchorus capsularis	Phaseolus vulgaris	27.41	16.27	96.3	162	forward
CNT30201813	Corchorus capsularis	Pisum sativum	98.14	35.39	88.79	580	forward
CNT30493658	Corchorus capsularis	Olea europaea	22.17	15.39	93.89	131	forward
CNT30710142	Corchorus capsularis	Glycine max	27.41	36.32	95.06	162	forward
CNT30284960	Corchorus capsularis	Triticum aestivum	97.63	64.98	90.81	577	forward
CNT30384007	Corchorus capsularis	Triticum turgidum	101.35	68.61	90.32	599	forward
CNT30569656	Corchorus capsularis	Actinidia chinensis	100.68	70.67	96.13	595	forward
CNT30543269	Corchorus capsularis	Brassica napus	100.68	20.1	97.31	595	forward
CNT30509374	Corchorus capsularis	Solanum lycopersicum	33.84	100	89.5	200	forward
CNT30136937	Corchorus capsularis	Lolium perenne	61.08	57.12	90.03	361	forward
CNT3018230	Corchorus capsularis	Zea mays	67.85	55.46	90.52	401	forward
CNT30230544	Corchorus capsularis	Ananas comosus	25.38	30.93	97.33	150	reverse complement
CNT30351849	Corchorus capsularis	Eragrostis tef	14.38	21.36	91.76	85	reverse complement
CNT30356947	Corchorus capsularis	Lactuca sativa	47.38	55.45	95.71	280	forward
CNT30153780	Corchorus capsularis	Prunus persica	37.56	24.8	96.4	222	forward
CNT30331679	Corchorus capsularis	Dioscorea rotundata	101.52	87.59	95.33	600	forward
CNT30150659	Corchorus capsularis	Brachypodium distachyon	15.23	38.46	94.44	90	forward
CNT30100515	Corchorus capsularis	Oryza rufipogon	15.4	35.83	91.21	91	reverse complement
CNT30115844	Corchorus capsularis	Oryza nivara	67.51	45.81	91.23	399	forward
CNT3049028	Corchorus capsularis	Cucumis sativus	16.58	33.79	98.98	98	forward

Expression of CNT30730546

Peptides detected in this lncRNA

>peptide 1 (30 aa)
IFRPGRFRDAPNNQRMASAFPCVDPISMGT*

>peptide 2 (73 aa)
YFDPDVFGMPLITNEWQVLFLVWILFQWELDESTRLHVLLLLLYRELLYVLLDVKQIVDLFLSFVESFSRLDR*

Sequence

>CNT30730546
ATATTTCGACCCGGACGTTTTCGGGATGCCCCTAATAACCAACGAATGGCAAGTGCTTTTCCTTGTGTGGATCCTATTTCAATGGGAACTTGATGAGTCG
ACCCGGCTACACGTCTTGCTTTTACTGCTATATCGGGAGTTACTCTACGTATTGCTTGACGTAAAACAGATAGTGGATTTGTTTCTGTCTTTTGTTGAAT
CTTTTTCAAGGCTCGATAGATAATTTGATAAGCCAATGATTTTTTTCCGTGTTTCAGAATACGGTTAACCAACATGTTAACTAATCGATTACGATAAATT
GGATCGGATTTTGCAGTTTTTTCTTCTGCAGTACCTCGACGTGACATGAGCGTGAAAGGGGTTCAAGAATCCGTTTTCTTTTTATAAGGGCTAAAATCAT
TTATTTTGGCTTTTTTGACCCCTATATTTAACGCCCTTGTTGACGATCCTTTACTCCGACAGCATCTAGGGTTCCTCGAACAATGTGATATCTCACACCG
GGTAAATCCTTAACCCTTCCCCCTCTTACTAAGACTACAGAATGTTCTTGTGAATTATGGCCAATACCAGGTATATAAGCAGTGATTTCAA