« Back to Triticum turgidum search


Detailed information on CNT30384007


BLAST search results

BLAST vs Swiss-Prot:
sp|A8Y9D1|RR7_LOLPR, E-value = 1e-81

BLAST vs NONCODE:
NONOSAT000698, E-value = 0.0

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30695659Triticum turgidumOryza sativa49.8351.7998.85435forward
CNT30677912Triticum turgidumSetaria viridis46.9625.596.83410forward
CNT30617775Triticum turgidumSesamum indicum48.1163.4485.95420forward
CNT3021516Triticum turgidumCitrullus lanatus47.5422.5790.6415forward
CNT30730546Triticum turgidumCorchorus capsularis68.61101.3590.32599forward
CNT30406883Triticum turgidumBeta vulgaris22.5776.6588.83197forward
CNT30201818Triticum turgidumPisum sativum39.2924.9190.67343forward
CNT30710142Triticum turgidumGlycine max19.2437.6789.88168forward
CNT30284960Triticum turgidumTriticum aestivum94.3992.7999.03824forward
CNT30569656Triticum turgidumActinidia chinensis94.3997.8690.9824forward
CNT3083498Triticum turgidumVigna radiata7.3327.5990.6264reverse complement
CNT30543269Triticum turgidumBrassica napus91.2926.9391.09797forward
CNT30509374Triticum turgidumSolanum lycopersicum23.25101.587.68203forward
CNT30136937Triticum turgidumLolium perenne45.9363.4598401forward
CNT3018230Triticum turgidumZea mays50.0660.4498.17437forward
CNT30610163Triticum turgidumGossypium raimondii23.8339.184.13208forward
CNT30228329Triticum turgidumAnanas comosus23.3798.5589.71204forward
CNT30684722Triticum turgidumTriticum urartu32.7626.898.6286forward
CNT30364733Triticum turgidumSorghum bicolor7.125.4198.3962forward
CNT30356947Triticum turgidumLactuca sativa57.7399.890.87504forward
CNT30153780Triticum turgidumPrunus persica29.6728.9486.87259forward
CNT30416238Triticum turgidumPapaver somniferum46.9653.5291.22410forward
CNT30324879Triticum turgidumAsparagus officinalis19.5948.7287.13171reverse complement
CNT30331679Triticum turgidumDioscorea rotundata75.1495.7790.85656forward
CNT30150659Triticum turgidumBrachypodium distachyon25.3294.4491.86221forward
CNT30115844Triticum turgidumOryza nivara49.8349.9499.08435forward
CNT30604848Triticum turgidumOryza punctata16.3843.7393.71143reverse complement
CNT3049028Triticum turgidumCucumis sativus13.6341.0391.6119forward

Expression of CNT30384007

Peptides detected in this lncRNA

>peptide 1 (30 aa)
MRYLTPGKSLTLPPLTNTTECCKLWPIPGI*

>peptide 2 (38 aa)
MRFSPHTAPRSILSKGSFFSFESLRPSSTPSRRLTKTN*

>peptide 3 (65 aa)
AASTNSELNLKAIFRPGRFWDASNNQRMASALPCLDPISIETFRVDPFLLRLVFTPILGVTLRIA*

>peptide 4 (85 aa)
MANTRYISSDFKSEVNRTLATLRKAKLGFLGLIVEKSTDKSPLLSLYRTVHEIFTSYGSSVNSFEGILFLVRESPPFFHSVPKTN*

Sequence

>CNT30384007
GCAGCATCTACTAATTCGGAACTTAATTTGAAAGCCATATTTCGACCCGGACGCTTTTGGGATGCTTCTAATAACCAACGAATGGCAAGTGCTCTTCCTT
GTTTAGATCCTATTTCAATCGAAACTTTCCGCGTCGATCCTTTTTTATTACGTCTTGTTTTTACTCCTATATTGGGAGTTACTCTACGTATTGCTTGACG
TAAAACCAATAGTGGATTTGTTTCTGTCTTTTGTTGAATCTTTTTCACGGCTCGATAGAGAATTTGATAAGCCAATGATTTTTTTCCGTCTTTCATAATA
CGGTTAACCACCATGTTAACTAATCGATTACGAAAAATTGGATCGGATTTTGCAGTTCTTTTTTCTGCAGTACCTTGACGTGACATGAGCGTGAAAGAGG
TTCAAAATCTGTTTTCTTTTTATAAGGGCTAAAATCACTTATTTTTTTGGCTTTTTGACCCCATATTTAGAACGCCCTTGTTGACGATTCTTTACTACGA
CATCATCTAGGGTTCCTCGAATAATGCGATATCTCACACCGGGTAAATCCTTAACCCTTCCTCCTCTTACTAATACTACAGAATGTTGTAAATTATGGCC
AATACCAGGTATATAAGCAGTGATTTCAAATCAGAGGTTAATCGTACTCTGGCAACTTTACGTAAGGCAAAGTTGGGTTTTTTGGGGTTGATAGTGGAAA
AGTCGACAGATAAGTCGCCCTTACTGTCCCTTTACAGAACCGTACATGAGATTTTCACCTCATACGGCTCCTCGGTCAATTCTTTCGAAGGGATCCTTTT
TCTCGTTCGAGAGTCTCCGCCCTTCTTCCACTCCGTCCCGAAGACTAACTAAGACCAATTGAGTCACGTTTTC