Detailed information on CNT3017926


BLAST search results

BLAST vs Swiss-Prot:
sp|P92557|RT07_ARATH, E-value = 2e-09

BLAST vs NONCODE:
NONCQUT001706, E-value = 1e-77

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30198866Zea maysPisum sativum59.9570.2590.39229forward
CNT30485885Zea maysOlea europaea23.34.4592.1389forward
CNT30556129Zea maysOryza glaberrima37.9632.8898.62145reverse complement
CNT30598987Zea maysFraxinus excelsior40.315.1895.45154forward
CNT30607385Zea maysGossypium raimondii49.4817.986.24189forward
CNT30150988Zea maysBrachypodium distachyon47.9110.4898.36183forward
CNT30603929Zea maysOryza punctata46.0744.1198.3176reverse complement
CNT3049028Zea maysCucumis sativus45.8160.3491.43175forward

Expression of CNT3017926

Peptides detected in this lncRNA

>peptide 1 (56 aa)
MAPPLPLAASTNSELNLKAIFRPGRFWDASNNQRMASALPCLDPISIGTFRVDPFLL

>peptide 2 (51 aa)
MDPCVYIPRFCSWINENVQELYLPLPFYESLPFCVWHPHSLWQHLLIRNLI*

>peptide 3 (39 aa)
MISVFSFFSFLFVSKKISSDSPSIDSFPIEMYGSMCLHT*

>peptide 4 (29 aa)
MCKSSICLCHSMSRFLFAYGTPTPFGSIY*

Sequence

>CNT3017926
GCTTAGTTGATCATGATTTCTGTTTTCTCTTTTTTTTCCTTTTTATTTGTTTCGAAAAAGATATCGTCCGATTCTCCTTCTATTGATTCTTTTCCGATCG
AGATGTATGGATCCATGTGTCTACATACCTAGATTCTGTTCATGGATTAACGAAAATGTGCAAGAGCTCTATTTGCCTCTGCCATTCTATGAGTCGCTTC
CTTTTTGCGTATGGCACCCCCACTCCCTTTGGCAGCATCTACTAATTCGGAACTTAATTTGAAAGCCATATTTCGACCCGGACGCTTTTGGGATGCTTCT
AATAACCAACGAATGGCAAGTGCTCTTCCTTGTTTAGATCCTATTTCAATCGGAACTTTCCGCGTCGATCCTTTTTTATTAC