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Detailed information on CNT30543269


BLAST search results

BLAST vs Swiss-Prot:
sp|P61842|RR7_BRANA, E-value = 5e-97

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30695659Brassica napusOryza sativa19.8369.8889.95587forward
CNT30678391Brassica napusSetaria viridis12.9160.8393.19382forward
CNT30617775Brassica napusSesamum indicum17.678.793.86521forward
CNT3021516Brassica napusCitrullus lanatus12.520.1289.19370forward
CNT30730546Brassica napusCorchorus capsularis20.1100.6897.31595forward
CNT30406883Brassica napusBeta vulgaris8.6599.6190.23256forward
CNT30201818Brassica napusPisum sativum26.3256.5789.22779forward
CNT30492881Brassica napusOlea europaea8.0136.7490.72237forward
CNT30502643Brassica napusNicotiana attenuata11.1525.4885.45330forward
CNT30710142Brassica napusGlycine max5.6437.4495.81167forward
CNT30162794Brassica napusPistacia vera7.324.1386.11216forward
CNT30191576Brassica napusSecale cereale9.1669.1386.72271reverse complement
CNT30284960Brassica napusTriticum aestivum24.9783.2291.47739forward
CNT30384007Brassica napusTriticum turgidum26.9391.2991.09797forward
CNT30569656Brassica napusActinidia chinensis28.4510096.44842forward
CNT3083498Brassica napusVigna radiata3.3442.6790.9199reverse complement
CNT30237740Brassica napusBrassica oleracea10.6126.1999.68314forward
CNT30509374Brassica napusSolanum lycopersicum6.8210190.1202forward
CNT30556129Brassica napusOryza glaberrima4.2928.892.13127reverse complement
CNT30312611Brassica napusCamelina sativa10.6848.0290.51316reverse complement
CNT3059312Brassica napusArabidopsis lyrata4.0922.0899.17121forward
CNT3082974Brassica napusBrassica juncea20.270.3598.83598reverse complement
CNT30136937Brassica napusLolium perenne16.8678.9690.18499forward
CNT3018230Brassica napusZea mays17.8773.1791.12529forward
CNT30610477Brassica napusGossypium raimondii11.1148.5391.49329forward
CNT30228329Brassica napusAnanas comosus6.1187.4495.03181forward
CNT30213923Brassica napusHelianthus annuus4.1923.7192.74124reverse complement
CNT30627895Brassica napusDaucus carota4.3242.1193.75128forward
CNT30684722Brassica napusTriticum urartu16.5946.0284.93491forward
CNT30351849Brassica napusEragrostis tef2.8721.3691.7685reverse complement
CNT30356947Brassica napusLactuca sativa16.1594.6596.44478forward
CNT30153780Brassica napusPrunus persica13.9946.2696.86414forward
CNT30416238Brassica napusPapaver somniferum16.8265.0191.97498forward
CNT30644293Brassica napusCannabis sativa2.7725.5591.4682forward
CNT30319059Brassica napusAsparagus officinalis10.4738.1389.68310forward
CNT30331679Brassica napusDioscorea rotundata23.1410096.35685forward
CNT30150789Brassica napusBrachypodium distachyon7.6727.4887.22227forward
CNT30100515Brassica napusOryza rufipogon3.1136.2291.392reverse complement
CNT30578031Brassica napusOryza barthii4.3224.2982.81128reverse complement
CNT30115844Brassica napusOryza nivara21.3972.6888.94633forward
CNT30603929Brassica napusOryza punctata4.6334.3487.59137reverse complement
CNT30550344Brassica napusOryza brachyantha7.5394.8987.89223reverse complement
CNT30726938Brassica napusLupinus angustifolius4.1960.1991.94124reverse complement
CNT3049028Brassica napusCucumis sativus6.1863.197.81183forward

Expression of CNT30543269

Peptides detected in this lncRNA

>peptide 1 (47 aa)
MCLYRSCSWINENVQTLYLPLPFYESLPFCVWHRHSLWQHPLIRNLI*

>peptide 2 (81 aa)
MQCSWAFMLIRMNHLFRGVKSLPARQDYRIASYKFCFGRTCISITMKFINEIVNRGVTILSFFFYLARVPKKREFVNFSGS*

>peptide 3 (31 aa)
MHSSNRNSFSERSWLSCFGGSPRSFRRPMLC*

>peptide 4 (31 aa)
NLQKKTNFFFFEWNIYGIPMNRLKPYSMVFT*

>peptide 5 (32 aa)
MRFSPHTAPRSILSKSLGPFPRSRISSVPKSN*

>peptide 6 (39 aa)
MRLCTLRIGIHFLKDPGFRALAGLRDPFDDLCCVEGISR*

>peptide 7 (49 aa)
MASPLPLAASTNSELNLKAIFRPGRFRDAPNNQRMASAFPCVDPISMGT*

>peptide 8 (65 aa)
MPLITNEWQVLFLAWILFQWELDELIRLHVLLLLLYRELLHVLLDVKQIVDLFLSFVESFSRLDR*

>peptide 9 (79 aa)
MFRLFFPFRLFRERDRSIPIFSFSIDSFRIEMYGSTDLCVYIDPVHGLTKMCKRSICLCHSMSLFLFAYGIATPFGSIH*

Sequence

>CNT30543269
CCAATCTCCAAAAAAAAACCAATTTTTTTTTTTTTGAATGGAATATTTACGGAATCCCCATGAATAGGTTAAAACCTTATTCCATGGTATTTACATGAGA
TTGCTCTTTCTTATTCTTAAGCAAGTCCCCGAGAGGGCTTAGTTGATCCATGATTTATGTTTCGTCTTTTCTTTCCTTTTCGTTTGTTTCGAGAAAGAGA
TCGATCAATTCCGATTTTTTCTTTTTCTATTGATTCTTTTCGGATCGAGATGTATGGATCCACGGATCTATGTGTCTATATAGATCCTGTTCATGGATTA
ACGAAAATGTGCAAACGCTCTATTTGCCTCTGCCATTCTATGAGTCTCTTCCTTTTTGCGTATGGCATCGCCACTCCCTTTGGCAGCATCCACTAATTCG
GAACTTAATTTGAAAGCCATATTTCGACCCGGACGTTTTCGGGATGCCCCTAATAACCAACGAATGGCAAGTGCTTTTCCTTGCGTGGATCCTATTTCAA
TGGGAACTTGATGAGTTGATCCGCCTACACGTCTTGCTTTTACTGCTATATCGGGAGTTACTCCACGTATTGCTTGACGTAAAACAGATAGTGGATTTGT
TTCTGTCTTTTGTTGAATCTTTTTCAAGGCTCGATAGATAATTTGATAAGCCAATGATTTTTTTCCGTGTTTCAGAATACGGTTAACCAACATGTTAACT
AATCGATTACGATAAATTGGATCGGATTTTGCAGTTTTTTCTTCTGCAGTACCTCGACGTGACATGAGCGTGAAAGGGGTTCAAGAATCTGTTTTCTTTT
TATAAGGGCTCAAATCTTTTATTTTGGCTTTTTGACCCCATATTGTAGGAACGCCCTTGTTGACGATCCTTTACTCCGACAGCATCTAGGGTTCCTCGAA
CAATGTGATATCTCACACCGGGTAAATCCTTAACCCTTCCCCCTCTTACTAAGACTACAGAATGTTCTTGTAAATTATGGCCAATACCAGGTATATAAGC
AGTGATTTCAAATCCCGAGGTTAATCGTACTCTGGCAACTTTACGTAAGGCAGAGTTTGGTTTTTTGGGGGTGATAGTGGAAAAGTTGACAGATAAGTCA
CCCTTACTGCCACTCTACAGAACCGGACATGAGATTTTCACCTCATACGGCTCCTCGTTCAATTCTTTCGAAGTCATTGGGTCCCTTTCCTCGTTCGCGA
ATCTCCTCCGTCCCGAAGAGTAACTAGGATAAACTCGGTCACGTTTTCATGTTCCAATTGAACACTTTCTATTTTTGATTATTCTCAAAGGATAAGATTA
TTCTTTTTACCAAACATCTGCGGGTCCAATCACACGATCTTATAATAAGAACAAGAGATCTTTCTCGATCAATCTCTTTGCCCCTCATTCTTCGAGAATC
AGAAAGAGACTTTTTCAAGTTTGAATTTGTTCATTTGTAATCTGGGTTCTTCTACTTCATTTTTATTTACTTATTATTTCTTTATTTTCCCTCTCTTTTC
TTTATTTGATTTCTTTTTTGATTTTATTCCCTTCCATCATTCTTAAGTCCCATAGGTTTGATCCTATAGAATCTGACCCATGTTCTCATTGAGCGAAGGG
TACGAAATAAATTCAATCATATTTTTTTTTGATCAAAAAAAAATCACTATGTGAAATCTTCGTTTTTTTTTTTCTCTTTCTCTATCGCTTTCCCATAAGT
ACAGCACTTGTTGAATCGATAGAGAACCTTTTCTTCTGTATCGATATGAATCCATTATGAATCGATATTATTACATTCCAATTCCTTACCAATATCCCTC
AAGGAAAATCCCGAATTGGATCCCAAATTGACGGGTTAGTGTGAGCTTATCCATGCGGTTATGCACTCTTCGAATAGGAATTCATTTTCTGAAAGATCCT
GGCTTTCGTGCTTTGGCGGGTCTCCGAGATCCTTTCGACGACCTATGTTGTGTTGAAGGGATATCTAGATGATCCGATCGATTGCGTAAAGCCCGCAGTA
GCAACGGAACCGGGGAAAGTATACATAAGTATACAGAAAAGACAGTTCTTTTCTATTATATTAGGATTTTCTATTCTATTAGATTAGTGTTAGTTAGTGA
TCTTGGCGCAGTGAGTCCTTTCTTCTCGGTCCACAGAGACAAAATGTAGGACTGGTGCCAACAGTTAATCACGGAAGAAAGGAGGCTCAGCGGGAAGAGG
ATTGTACCATAGAAGCAAGGAGGTCAACCTCTTTCCAATAGATAACATGAATTCTGGCAATGCAATGTAGTTGGGCTTTCATGTTGATCCGAATGAATCA
TCTTTTTCGCGGAGTGAAATCTTTGCCTGCTAGGCAAGATTATAGGATAGCAAGTTACAAATTCTGTTTCGGTAGGACATGTATTTCTATTACTATGAAA
TTCATAAATGAAATAGTTAATCGTGGGGTTACCATTCTCTCTTTTTTTTTTTATCTCGCACGTGTTCCTAAGAAAAGGGAATTTGTTAATTTTTCGGGGT
CTTAAAGGGGCGTGGAAACACATAAGAACTCTTGAATGGAAATGGAAAAGAGATGTAACTCCAGTTCCTTTGGAAATAGGAAGATCTTTGGCGCAAGAAT
AAAGGATTAATCCGTATCATCTTGACTTGGTTCTGATTTCTCTATTTTTTGAAGTTTAAGAAAAGAATACCGTTTCTCCTACCCGTATCGAATAGAACAT
GCTGAGTAAAATCTTCTTCATGTAAAACCGGCTTGATTTAGATCGGGAGAATCGTACGGTTTTATGAAACCATGTGCTATGGCTCGAATCCGTAGTCAAT
CCTATTTCCGATAGGAGTAGTTGACAATTGAATCCAACTTTTTCCATTATTTTCATTTCATACCCGTAATAGTGCGAAAGGAAAGCCCGGCTCCAATCCA
AGTTGTTCAAGAATAGTGGCCTTGAGTTTCTCGACCCTTTGACTTAGGATTAGTCAGTTC