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Detailed information on CNT3015504


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30692506Zea maysOryza sativa13.3928.1296.381forward
CNT30521685Zea maysSetaria italica42.9884.4285260forward
CNT30185912Zea maysSecale cereale13.3928.7293.8381reverse complement
CNT30308216Zea maysTriticum aestivum42.4884.5484.82257forward
CNT30227081Zea maysHordeum vulgare13.3927.3693.8381forward
CNT30391813Zea maysTriticum turgidum25.4549.0486.36154reverse complement
CNT30553207Zea maysOryza glaberrima14.8828.8593.3390forward
CNT30442760Zea maysAegilops tauschii42.4884.5485.21257forward
CNT30663261Zea maysTriticum dicoccoides42.6484.8784.5258forward
CNT30130300Zea maysLolium perenne12.2325.6191.8974reverse complement
CNT3066721Zea maysLeersia perrieri14.0527.1695.2985forward
CNT30684136Zea maysTriticum urartu42.8175.0784.17259forward
CNT30368288Zea maysSorghum bicolor45.4569.886.18275forward
CNT30596008Zea maysOryza meridionalis42.9884.1484.23260forward
CNT30369785Zea maysOryza glumipatula13.3920.7796.381reverse complement
CNT30108933Zea maysOryza longistaminata13.3926.1395.0681forward
CNT30150266Zea maysBrachypodium distachyon14.2128.294.1986forward
CNT30100969Zea maysOryza rufipogon24.9649.5187.42151forward
CNT30575474Zea maysOryza barthii13.5526.293.982forward
CNT30115932Zea maysOryza nivara24.9649.6788.08151forward
CNT30603809Zea maysOryza punctata18.6836.8192.04113forward
CNT30550736Zea maysOryza brachyantha42.4883.4482.88257forward

Expression of CNT3015504

Peptides detected in this lncRNA

>peptide 1 (91 aa)
RTQLKHLAPPRQTTLRYTSLNIHPDRLLSPSSVARACNLSGGIKVVWMFPDGFWAWACMCHWPACPFQVGCGWWGSGEGLGLFRPEAAGMA*

>peptide 2 (43 aa)
MTQIYHQSPCMQQIFLPSPICMAFVPESWIQFPDDRNPPTTTLA

>peptide 3 (40 aa)
MFLLLINLFISRLLYDSNLSSISLYATNIFAVSYLYGLRS*

>peptide 4 (37 aa)
SHSAQAFSTTSPDHTPLHQFKYSSRPPALAELSSESL*

Sequence

>CNT3015504
TCGCACTCAGCTCAAGCATTTAGCACCACCTCGCCAGACCACACTCCGCTACACCAGTTTAAATATTCATCCCGACCGCCTGCTCTCGCCGAGCTCAGTA
GCGAGAGCTTGTAACCTAAGCGGGGGCATTAAGGTGGTGTGGATGTTTCCTGACGGATTCTGGGCCTGGGCCTGTATGTGCCACTGGCCGGCCTGCCCGT
TCCAAGTTGGTTGTGGCTGGTGGGGCTCGGGCGAAGGCCTGGGCCTCTTTAGACCTGAAGCGGCAGGCATGGCGTGAGGCTGGCTTCACAGAGCAGCGAT
CACTGCCCGCTTCCAACGGTGGGAGGATAACAGGCCGCTGCATTGCAAGCCCAACTCGGTCCAGAGCCTCATTAAACAGACCACCATCTTTTTGTTTTTT
TTGGACTGTTCTTCCCTCGGCGCAAAAAATGTTTTTGCTTTTAATAAATCTGTTTATCTCCAGACTTCTCTATGACTCAAATCTATCATCAATCTCCCTG
TATGCAACAAATATTTTTGCCGTCTCCTATTTGTATGGCCTTCGTTCCTGAAAGTTGGATACAGTTTCCAGATGATCGGAACCCGCCGACGACAACATTG
GCGCT