Detailed information on CNT30574593


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30690183Oryza barthiiOryza sativa102.24100.3196.55319forward
CNT30521685Oryza barthiiSetaria italica45.1945.7889.36141forward
CNT30308216Oryza barthiiTriticum aestivum67.3169.0884.29210forward
CNT30391813Oryza barthiiTriticum turgidum68.5968.1585.98214reverse complement
CNT30552322Oryza barthiiOryza glaberrima100100100312forward
CNT30442760Oryza barthiiAegilops tauschii66.0367.7684.95206forward
CNT30664085Oryza barthiiTriticum dicoccoides55.1355.4884.88172forward
CNT30445279Oryza barthiiSaccharum spontaneum49.0426.286.93153reverse complement
CNT3066721Oryza barthiiLeersia perrieri65.7165.585.85205forward
CNT30623316Oryza barthiiDaucus carota26.2826.9786.5982forward
CNT30684136Oryza barthiiTriticum urartu67.6361.1684.36211forward
CNT30339268Oryza barthiiEragrostis tef48.7251.8887.5152forward
CNT30369487Oryza barthiiOryza glumipatula101.28105.6989.87316forward
CNT30108933Oryza barthiiOryza longistaminata100.64101.2992.36314forward
CNT3099765Oryza barthiiOryza rufipogon102.24100.3195.92319forward
CNT30115823Oryza barthiiOryza nivara102.24100.3196.24319forward

Expression of CNT30574593

Peptides detected in this lncRNA

>peptide 1 (32 aa)
PSSVARACNPSGGTKVAADVLVWILILVPMLL*

Sequence

>CNT30574593
GCCGAGCTCAGTAGCGAGAGCCTGTAACCCAAGCGGGGGCACTAAGGTGGCTGCGGATGTTTTGGTGTGGATTCTGATCCTGGTCCCCATGTTGTTGTAA
TCTTGCTGGCTTGCCCGTTCCAAGTTGCGTAGTGGGCCGAGGGGCTTTGGCGAAGGCCTTTGCTTCTCCGGCCCTAAAGTGGCAGGCACAGTGTGAGGCT
GGCTTCACAGAGCAGCGATCACTGCCCGCTTCCATCGGTGGAAGGATAACAGGCTGCTGCACCTTGGGCCCGCTTCTGGCCTAGAGTCCCTCTACAACAG
ACCACCATCTTT