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Detailed information on CNT30369533


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30691521Oryza glumipatulaOryza sativa15.9230.3810089forward
CNT30674000Oryza glumipatulaSetaria viridis10.0220.6691.0756forward
CNT30303822Oryza glumipatulaTriticum aestivum36.8537.887.38206forward
CNT30397679Oryza glumipatulaTriticum turgidum21.2942.8191.6119forward
CNT30441596Oryza glumipatulaAegilops tauschii36.8527.9987.38206forward
CNT30140296Oryza glumipatulaLolium perenne34.3519.7985.42192forward
CNT30595683Oryza glumipatulaOryza meridionalis39.1816.8999.54219forward
CNT30100474Oryza glumipatulaOryza rufipogon20.2154.07100113forward
CNT30575228Oryza glumipatulaOryza barthii43.1119.02100241forward
CNT30583519Oryza glumipatulaEchinochloa crusgalli36.3179.383.25203forward
CNT30115627Oryza glumipatulaOryza nivara29.879.75100167forward
CNT3048728Oryza glumipatulaCucumis sativus16.4624.1583.792forward

Expression of CNT30369533

Peptides detected in this lncRNA

>peptide 1 (75 aa)
KERQASKSIHATMRANQLEHKFTCYTHTLHPCIIIHRIYVRTYIPLSITRTIDRTKLRTYIRTHIYAYARTYIHN*

>peptide 2 (51 aa)
MLHPHPTPMHNNTSYIRTYIHTPLDHTHHRSYKVAYIHTYTHIRIRTYIHT*

>peptide 3 (53 aa)
MLLWTGSARCRCPRGGSRRSGTTGSPSRRGRGPACRGAPGRPCRRRPSSPSGR*

>peptide 4 (33 aa)
QKRDKLANRSMRPCVQISWSTNLHVTPTPYTHA*

Sequence

>CNT30369533
CAAAAGAGAGACAAGCTAGCAAATCGATCCATGCGACCATGCGTGCAAATCAGTTGGAGCACAAATTTACATGTTACACCCACACCCTACACCCATGCAT
AATAATACATCGTATATACGTACGTACATACATACCCCTCTCGATCACACGCACCATCGATCGTACAAAGTTGCGTACATACATACGTACACACATATAC
GCATACGCACGTACATACATACATAATTAAAAACTCGTAATTAATTAAATACGTAGTTGATGGCATCTCTAATGGAACTTGAGGCTGGTGAGGATGTTGT
TGTGGACGGGATCAGCGAGGTGTAGGTGCCCGCGGGGGGGATCACGCCGGTCTGGAACCACGGGATCGCCGTCTCGGCGGGGACGAGGCCCAGCTTGCCG
AGGAGCTCCGGGGCGACCATGCCGACGACGCCCATCATCGCCGTCCGGCCGTTGAACACCTCGCCGTAGGCCAGCCACCGTGGCTCGATGAACCCGCCGG
TCCCCTCCGGGTCCGATAGCCCCAGCGGGTCGAACCCGAAGTCTCCCGGAAGCCTGCAT