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Detailed information on CNT30395365


BLAST search results

BLAST vs Swiss-Prot:
sp|Q36718|CB120_HORVU, E-value = 5e-39

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30695577Triticum turgidumOryza sativa86.8123.390.3237forward
CNT30675752Triticum turgidumSetaria viridis86.8140.7992.41237forward
CNT30523687Triticum turgidumSetaria italica86.8133.5292.41237forward
CNT30526306Triticum turgidumPhaseolus vulgaris28.218.2284.4277forward
CNT30708850Triticum turgidumGlycine max28.219.7288.3177forward
CNT30300839Triticum turgidumTriticum aestivum88.2822.5998.76241forward
CNT30224033Triticum turgidumHordeum vulgare45.4227.93100124forward
CNT30564637Triticum turgidumActinidia chinensis31.57.5584.8886forward
CNT30554723Triticum turgidumOryza glaberrima72.5314.5189.39198forward
CNT30138628Triticum turgidumLolium perenne31.518.2698.8486forward
CNT308181Triticum turgidumZea mays66.6733.1589.01182forward
CNT30205828Triticum turgidumHelianthus annuus24.9117.6686.7668forward
CNT30626732Triticum turgidumDaucus carota23.815.1987.6965forward
CNT30596737Triticum turgidumOryza meridionalis33.715.1392.3992forward
CNT30370931Triticum turgidumOryza glumipatula86.8113.7390.72237forward
CNT30573808Triticum turgidumVitis vinifera32.613.9985.3989forward
CNT30103133Triticum turgidumOryza rufipogon70.3326.7489.06192forward
CNT30117373Triticum turgidumOryza nivara86.8115.1490.72237forward
CNT30604463Triticum turgidumOryza punctata83.8819.5290.39229forward

Expression of CNT30395365

Peptides detected in this lncRNA

>peptide 1 (89 aa)
VGELLLLVLEARVLDVLPPPDLHVVEEDELDDEERGGGGEVGLLAGVVPLGRVQQPRLGQHLRDQHPRHPQHRPPPVHQLRLHEPPQVLR

Sequence

>CNT30395365
CCGTTGGCGAGCTCCTTCTCCTTGTTCTCGAGGCCCGGGTTCTTGATGTCCTGCCACCGCCGGATCTCCACGTAGTGGAAGAGGATGAACTCGATGACGA
AGAGCGTGGAGGAGGAGGCGAAGTAGGTCTCCTTGCCGGCGTCGTACCACTCGGGCGCGTTCAGCAGCCCCGCCTTGGTCAGCACCTCCGGGATCAGCAT
CCCCGCCACCCCCAGCATCGCCCACCGCCCGTTCACCAGCTCCGCCTGCACGAACCACCGCAGGTCCTCCGGG