Detailed information on CNT308181


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30695577Zea maysOryza sativa33.8818.2990.86186forward
CNT30675752Zea maysSetaria viridis33.8832.0196.77186forward
CNT30523687Zea maysSetaria italica33.8826.3196.77186forward
CNT30300839Zea maysTriticum aestivum33.1517.0689.01182forward
CNT30224033Zea maysHordeum vulgare21.8627.0386.67120forward
CNT30395365Zea maysTriticum turgidum33.1566.6789.01182forward
CNT30591239Zea maysMusa acuminata28.2355.3687.1155forward
CNT30554723Zea maysOryza glaberrima27.511.0690.73151forward
CNT30685421Zea maysTriticum urartu24.4156.393.28134forward
CNT30339489Zea maysEragrostis tef29.339.4796.89161forward
CNT30370931Zea maysOryza glumipatula33.8810.7891.4186forward
CNT30103133Zea maysOryza rufipogon33.8825.9191.4186forward
CNT30117373Zea maysOryza nivara33.8811.8891.4186forward
CNT30604463Zea maysOryza punctata33.8815.8689.78186forward

Expression of CNT308181

Peptides detected in this lncRNA

>peptide 1 (33 aa)
MYIYQYVTFLSPQSIKNASHELSSSLGLSARTT*

>peptide 2 (83 aa)
MMVLCHGSDRCCSRLSKGPLPVTMNSITNSVDDDAKYSDLPASYHCGALISPALVSTSGISIPATPSIAHRPFTSSACTYHLRF

Sequence

>CNT308181
CTTAATTATAAGCCTATATATCTACTAGCAGTTCTTGTACTAATAATACATGTGCTTCCACAATGAATCGTGAAAAGCACAAAACAAAACCCATCGGGAC
AGATGATATACACTGATGAAACAATCTCTACACCCTTTATAGCCTCCGCTTCAACTAATGTACATATACCAGTACGTCACATTCCTTAGCCCTCAGTCGA
TTAAGAACGCATCACACGAACTGTCTTCGAGTCTCGGCCTTTCAGCTCGGACCACATGACCTGATGGACCGTCGACTCAACCCGACAGGGTCTGGATGAT
GGTGTTGTGCCATGGGTCGGACAGGTGCTGCAGCAGGTTGTCGAAGGGCCCCTTGCCGGTGACGATGAACTCGATCACGAACAGCGTCGACGACGACGCG
AAGTACTCCGACTTGCCGGCGTCGTACCACTGCGGCGCGTTGATCAGCCCGGCCTTGGTCAGCACCTCCGGGATCAGCATCCCGGCCACGCCCAGCATCG
CCCACCGCCCGTTCACCAGCTCCGCCTGCACGTACCACCTCAGGTTCTC