Detailed information on CNT30224033


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30300691Hordeum vulgareTriticum aestivum61.2630.3694.85272forward
CNT30395365Hordeum vulgareTriticum turgidum27.9345.42100124forward
CNT308181Hordeum vulgareZea mays27.0321.8686.67120forward
CNT30685421Hordeum vulgareTriticum urartu22.341.698.9999forward
CNT30103133Hordeum vulgareOryza rufipogon27.4816.9984.43122forward

Expression of CNT30224033

Peptides detected in this lncRNA

>peptide 1 (70 aa)
MGESTRTKFHHRNFKITTRFCTATYSSTLCTSSAPQNNNSDHLKPPWSVKSTDLLAGDAPSPCSRGWGRS*

>peptide 2 (29 aa)
MLLLLVLEGGGEVEGRMNSMTKSVEEEAK*

Sequence

>CNT30224033
TCATGGCGAATTCGATACTAATGCTTCAAACTAGTAGTATGTTTTGCCATGTTTTAAAATAACACGCATGGGTGATATTACAAGTACAGCCTCCGTCGGA
AGCCATGGGCGAATCCACAAGGACAAAGTTTCACCACCGGAACTTTAAGATTACAACACGTTTTTGCACTGCCACCTACTCCTCCACACTTTGTACATCC
TCAGCACCCCAAAATAATAATTCAGACCACCTGAAACCTCCTTGGTCGGTGAAATCGACGGATTTATTGGCCGGAGATGCTCCTTCTCCTTGTTCTCGAG
GGTGGGGGCGAAGTTGAGGGGAGGATGAACTCGATGACGAAGAGCGTGGAGGAGGAGGCGAAGTAGGTCTCCTTGCCGGCGTCGTACCACTCGGGCGCGT
TCAGCAGCCCCGCCTTGGTCAGCACCTCCGGGATCAGCATCCCC