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Detailed information on CNT30300839


BLAST search results

BLAST vs Swiss-Prot:
sp|P27521|CA4_ARATH, E-value = 3e-84

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30695577Triticum aestivumOryza sativa36.4638.2591.26389forward
CNT30675792Triticum aestivumSetaria viridis32.950.3693.16351forward
CNT30523568Triticum aestivumSetaria italica35.0535.5293.32374forward
CNT30395365Triticum aestivumTriticum turgidum22.5988.2898.76241forward
CNT30554749Triticum aestivumOryza glaberrima30.3718.6491.05324forward
CNT308181Triticum aestivumZea mays17.0633.1589.01182forward
CNT30370931Triticum aestivumOryza glumipatula36.4622.5491.52389forward
CNT30102887Triticum aestivumOryza rufipogon23.4329.8393.2250forward
CNT30577292Triticum aestivumOryza barthii20.4319.6494.04218forward
CNT30117373Triticum aestivumOryza nivara36.4624.8691.52389forward
CNT30604463Triticum aestivumOryza punctata34.7731.6390.57371forward

Expression of CNT30300839

Peptides detected in this lncRNA

>peptide 1 (33 aa)
MVWMMVVCHGSASSFSLFSRVGAKLRGLKTLPG*

>peptide 2 (32 aa)
MFRITRMGDITSTASIGSHGRIHKKKVSPPEL*

>peptide 3 (47 aa)
MFPPAVEVGRGGEAGEPRPLGLDGDVAACGLGEADAAGVAQEPGARR*

>peptide 4 (37 aa)
MGESTRRKFHHRSFKITTHFCTVHLLLHTLYILSTPK*

>peptide 5 (75 aa)
MCAASCMKRIMCYCYVPTCRRGRQGRGGRGATTPWPGRRRRGVWTWRGRRGRSRPGTGGSTLTPLAGERPRERGH*

Sequence

>CNT30300839
TCACAGTTAATTCGAGACTAATGCTTCAAACTAGTAGTATGTTTTGCCATGTTTAGAATAACACGCATGGGTGATATTACAAGTACAGCCTCCATCGGAA
GCCATGGGCGAATCCACAAGAAGAAAGTTTCACCACCGGAGCTTTAAGATTACAACACATTTTTGCACTGTCCACCTACTCCTCCACACTTTGTACATCC
TCAGTACCCCAAAATAACAATTCAGACCACCTGAAACCTCCCCGGTCGGTGAAATCGACGGATTTACTGGCCGGAGATGGTCTGGATGATGGTGGTGTGC
CATGGGTCGGCCAGCTCCTTCTCCTTGTTCTCGAGGGTGGGGGCGAAGTTGAGGGGGTTGAAGACGCTGCCGGGGTAGCCGCACTCGTGGGGCGGGAGGC
TGTAGCTCTTGAAGATGGGGTCCTGGTTGACGGAGCCCGGGTTCTTGATGTCCTGCCACCGCCGGATCTCGACGTAGTGGAAGAGGATGAACTCGATGAC
GAACAGCGTGGAGGAGGAGGCGAAGTAGGTCTCCTTGCCGGCGTCGTACCACTCGGGCGCGTTCAGGAGCCCCGCCTTGGTCAGCACCTCCGGGATCAGC
ATCCCCGCCACCCCCAGCATCGCCCACCGCCCGTTCACCAGCTCCGCCTGCACGAACCACCGCAGGTCCTCCGGGTCCTCCGCCAGCGCCAGCGGGTCGA
AACCATTGTCACCCGCCAAGCTGAACGATCCATCCAACAAAGAGTATTAGCATACAAGTATGTGCGCTGCATCTTGCATGAAGCGCATCATGTGTTATTG
TTATGTTCCCACCTGCCGTCGAGGTAGGCAGGGGAGGGGAGGCCGGGGAGCCACGACCCCTTGGCCTGGACGGCGACGTCGCGGCGTGTGGACTTGGCGA
GGCCGACGCGGCCGGAGTCGCCCAGGAACCGGGGGCTCGACGCTGACGCCGCTGGCCGGAGAGCGGCCACGGGAGCGCGGGCACTGACTGACGACATCTT
GTCTAGAGAGCAGGTACGGCGCACCGCGGCAGGAGAGTGAGAGTGCGTCGGTGTGTGTGGTGGTTCT