Detailed information on CNT30554723


BLAST search results

BLAST vs Swiss-Prot:
sp|P27521|CA4_ARATH, E-value = 3e-77

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30224179Oryza glaberrimaHordeum vulgare8.4227.2592.17115forward
CNT30395365Oryza glaberrimaTriticum turgidum14.5172.5389.39198forward
CNT30591239Oryza glaberrimaMusa acuminata8.7942.8686.67120forward
CNT308181Oryza glaberrimaZea mays11.0627.590.73151forward
CNT30685421Oryza glaberrimaTriticum urartu8.5749.1687.18117forward
CNT30150529Oryza glaberrimaBrachypodium distachyon9.0130.5285.37123forward
CNT30102863Oryza glaberrimaOryza rufipogon41.6156.4698.77568forward

Expression of CNT30554723

Peptides detected in this lncRNA

>peptide 1 (84 aa)
MHAGNNYHNTHSKSESHHIHISLSPPPNSLTSYTCILQQKKKKKQEENIFDRPIIGFTSLNSSSSLRCPGPDEIDHTLSLTASG*

>peptide 2 (37 aa)
MHTPTKKKEETRREHLRSPNHRFHQPELIKLLEMPWP*

>peptide 3 (34 aa)
MHPDPCMQETITTTHTVSLNLITSISLSLLPPIH*

>peptide 4 (30 aa)
MEDCPRKVDLSDADGRRAATGARAVTDAMA*

>peptide 5 (29 aa)
MLLRVLVRFVPLASSFSLASRVGSKLRGL*

>peptide 6 (62 aa)
MMVLCHGSDRCCSRLSKGPFCVTLCCTRNPKNASIASLPATTTSTKIQNNGVVSLYAALLFL*

Sequence

>CNT30554723
TTTTTGTCTTTGAATCGATACGCAATACTGAATCAATGCGCAAATGAAGCACTTGACAAGCAATTAAGCGTAGTTTATCCACCATAATTAAGATCGAGAC
CATGAGATAGCTAGAACACTGCTGCTACCATGAGATAGTTTATCCCCCTGTAGTACTGTACATCAGAAATTCACCACTCAACTCACCCCCTCACCCATGC
ATCCAGATCCATGCATGCAGGAAACAATTACCACAACACACACAGTAAGTCTGAATCTCATCACATCCATATCTCTCTCTCTCCTCCCCCCAATTCATTA
ACATCTTATACATGCATACTCCAACAAAAAAAAAAGAAGAAACAAGAAGAGAACATCTTCGATCGCCCAATCATCGGTTTCACCAGCCTGAACTCATCAA
GCTCCTTGAGATGCCCTGGCCCTGATGAAATCGATCACACGCTCAGCCTGACAGCGTCTGGATGATGGTGTTGTGCCACGGGTCAGACAGGTGCTGCAGC
AGGTTGTCGAAGGGCCCCTTCTGCGTCACGTTGTGCTGCACCAGGAACCCCAAGAACGCCAGCATCGCCAGCCTCCCTGCAACAACAACATCAACAAAAA
TTCAGAACAATGGCGTCGTTTCATTGTATGCTGCTCTTCTTTTCTTATGATATATTGATGTGCAATGCTTTTACGTGTTTTGGTTAGATTCGTACCGTTG
GCGAGCTCCTTCTCCTTGGCCTCGAGGGTGGGCTCGAAGTTGAGGGGGCTGTAGCTCTTGAAGATGGGGTCCTGGTTGACGCAGCCAGGGTTCTTGATGT
CCTGCCACCGCCGGATCTCCACGTAGTGGAACAGGATGAACTCGATGACGAACAGCGTCGACGACGACGCGAAGTAGGTGGCCTTGCCGGCGTCGTACCA
CTGCGGCGCGTCGATCAACCCGATCTTCGTCAGCACCTCCGGCAGCAGCATCCCGGCCACCCCCAGCATCGCCCACCGCCCGTTCTCCGGGTCCTCCGCC
AGACCCAACGGGTCGAACCCGTTATCGCCTGGCAAGCTGTATACACCCGTTTAACTATCATGTTAGTAGTTTCTTATGATGCTCTCTATTGGCAGTAGAA
ATATATTTTTTTATGTGTGTGCTCACCTGCCGTTGAGGTAGGTGGGAGAAGGGAGGCCGGGGAGCCACTCTCCCTTGGCCTCCGCCCGAACATTACGCCT
CGTAGTCGGTGCGCGGGCGAGACGGATGGAGGATTGCCCTAGGAAGGTAGACTTGAGCGACGCCGACGGGCGGAGGGCTGCGACCGGGGCGCGGGCGGTG
ACGGACGCCATGGCTTAGCTTCCCCGGCTTAGAGAGGGGAGGAAGCGAAGCGGGTGTAGTCACAA