Detailed information on CNT30220915


BLAST search results

BLAST vs Swiss-Prot:
sp|P10708|CB12_SOLLC, E-value = 1e-36

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30288773Hordeum vulgareTriticum aestivum83.772.5288.42190forward
CNT30555842Hordeum vulgareOryza glaberrima28.6318.7393.8565forward
CNT30131664Hordeum vulgareLolium perenne68.2863.7994.19155forward
CNT30126375Hordeum vulgareCorymbia citriodora27.7519.2788.8963forward
CNT30370710Hordeum vulgareOryza glumipatula57.2732.9193.85130forward
CNT30496219Hordeum vulgareDigitaria exilis33.9234.0794.8177forward

Expression of CNT30220915

Peptides detected in this lncRNA

>peptide 1 (74 aa)
MTASMARRPFLISLVRSSLSFSGEPVPLLLGKMGMSSTMKRVVVSVKYSCSPAVYHDGVLRMPILVSSSGMKMPA

>peptide 2 (74 aa)
HDGEHGQAAVLDLLGAQLLELLGRAGALVVGEDGDELHDEEGGGVGEVLLLPGGVPRRRVEDADLGQQLWDEDAR

Sequence

>CNT30220915
CATGACGGCGAGCATGGCCAGGCGGCCGTTCTTGATCTCCTTGGTGCGCAGCTCCTTGAGCTTCTCGGGCGAGCCGGTGCCCTTGTTGTTGGGGAAGATG
GGGATGAGCTCCACGATGAAGAGGGTGGTGGTGTCGGTGAAGTACTCCTGCTCCCCGGCGGTGTACCACGACGGCGTGTTGAGGATGCCGATCTTGGTCA
GCAGCTCTGGGATGAAGATGCCCGCCG