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Detailed information on CNT30266710


BLAST search results

BLAST vs Swiss-Prot:
sp|P12359|PSBO_SPIOL, E-value = 2e-149

BLAST vs NONCODE:
NONTCAT000011, E-value = 1e-69

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30675069Chenopodium quinoaSetaria viridis24.4470.3782.3209forward
CNT30547255Chenopodium quinoaIpomoea triloba25.8542.582.35221forward
CNT30377797Chenopodium quinoaArabidopsis thaliana15.5652.5784.21133forward
CNT30710612Chenopodium quinoaGlycine max37.1930.8183.02318forward
CNT30181115Chenopodium quinoaSecale cereale26.216.8981.7224forward
CNT30287195Chenopodium quinoaTriticum aestivum30.0629.0180.54257forward
CNT30221336Chenopodium quinoaHordeum vulgare26.232.4282.14224forward
CNT30385696Chenopodium quinoaTriticum turgidum21.7545.9382.26186forward
CNT30592113Chenopodium quinoaMusa acuminata20.3523.982.18174forward
CNT30238377Chenopodium quinoaBrassica oleracea28.894680.97247forward
CNT30436022Chenopodium quinoaAegilops tauschii29.9425.9480.86256forward
CNT30242448Chenopodium quinoaAvena sativa21.7534.982.8186forward
CNT30657734Chenopodium quinoaTriticum dicoccoides30.0628.4380.54257forward
CNT309111Chenopodium quinoaZea mays26.230.5282.14224forward
CNT30680645Chenopodium quinoaTriticum urartu30.0626.8580.93257forward
CNT30348024Chenopodium quinoaEragrostis tef30.0641.6581.32257forward
CNT30368337Chenopodium quinoaSorghum bicolor26.233.6881.7224forward
CNT30621504Chenopodium quinoaCajanus cajan23.5112.7582.09201forward
CNT30319324Chenopodium quinoaAsparagus officinalis16.3743.8982.14140forward
CNT30584058Chenopodium quinoaEchinochloa crusgalli30.0620.381.71257forward
CNT30557665Chenopodium quinoaPanicum hallii13.2220.2983.19113forward

Expression of CNT30266710

Peptides detected in this lncRNA

>peptide 1 (78 aa)
MVPFDEAVFLMFSFWSSSSSPLPPAGNATALSYPDDPLYDGTKNSPVKASGFPEATSCLMVKRKGTRSPPGSWTVTAA*

>peptide 2 (65 aa)
MSLVFWKSGGAFLLMPSALTANLVGSRQNFLAVYLPGLKAKESTPPTMVGHWLAVPVPLTSRYVLL

Sequence

>CNT30266710
AGTAGCACAAACAATTTATTGTTGATATAAATTTCAATATGAGACATGAAATCTACAAAGAACTATAATATACAAGAAGCAGGGTTATAAGTTTCTCCTT
AATATAATAGAAGTCATAGAAATCCCTTACAAACTTACAACAAAAAGAGCTCAATAATCATACAGAAATTACCCTGCACCTATTGCTCAAGTTGTGCATA
CCAGACTCCTTCAATCTTCACATCTTTGGGAACCTTAGCTCCCAAATCAGTGTCTGATGGCTGAAGACTCTGGAACACTCCAATAACCTCACCGGTCTCG
GGCTTGCTCGAAGTCACACTCAAAGTAATGGTTCCTTTTGATGAAGCAGTGTTCTTGATGTTTTCCTTTTGGAGCTCTTCTTCGTCTCCTCTTCCTCCTG
CAGGCAATGCCACGGCGTTGTCATATCCGGATGATCCTCTGTATGATGGAACTAAGAACTCTCCAGTAAAGGCCTCGGGTTTTCCTGAGGCAACGAGTTG
CTTGATGGTGAAGAGGAAAGGTACGCGTTCACCACCAGGAAGCTGGACTGTGACTGCGGCGTAGTCAATGCCATCTTTCTCCTCGAACTTGACTGTGCCA
TCGGGTGCAACCTCGAAGGGTCCCTCAATCTCATCAAGGGTGTAGGTTAGACGGGTCATGAGCTTGGTGTTTTGGAAGTCTGGTGGGGCGTTCTTGCTGA
TGCCTTCGGCCTTGACAGCGAATTTAGTAGGCTCGAGGCAGAACTTCTTGGCAGTGTACTTGCCTGGCTTGAAGGCAAAGGAGTCTACTCCACCTACAAT
GGTTGGGCATTGGTTGGCTGTTCCGGTTCCTTTGACTTCGAGGTATGTCTTGCTC