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Detailed information on CNT30371173


BLAST search results

BLAST vs Swiss-Prot:
sp|Q01595|CCDP_MAIZE, E-value = 2e-22

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30696568Oryza glumipatulaOryza sativa95.9491.3198.94757forward
CNT30348037Oryza glumipatulaEragrostis tef29.446.4986.21232forward

Expression of CNT30371173

Peptides detected in this lncRNA

>peptide 1 (76 aa)
MRLRSMGMLRLSLMPSTLALMAVQRQTAASRSTRPSSSEQQGSYGDTAPTLALTRPSTLAHTCSFSASRGHDDPPP*

Sequence

>CNT30371173
CTAATTGCAACTTCGATTGACATCTGAACCATAACAGATCATAAGCACAAAAAATACATATATATTGACCAGTAAACTGATCACCCGGGGTCACAACCAA
CACTTACACATGTAATAATACATACTGGCCAATGGTTTTTTCCCAGAACTAATTAAACTTTGCAAGCATAAACAAAGACAAAACAGACAGTTTCCAAAGT
TCAGAGAGTTCAGACTGCTCACAGTAAACCAACCAACAAAAACATGTAGACGACGTGTAGCACACTGTCAATCGATCGATCGATCGATCGGCTGCAGTGT
CCCAATGTGATTAAGCACACTGGTAGTCGGATGGGCAGATCTTGCCGCAGTTGTTGAGGATGAGGCTGAGGTCGATGGGGATGTTGAGGTTGAGCTTGAT
GCCCAGCACGTTGGCCTTGATGGCGGTGCAGAGGCAGACGGCGGCGTCGAGGTCGACGAGGCCGTCGAGCAGCGAGCAGCAGGGCTCGTACGGCGACACG
GCGCCGACCTTGGCCTTGACGAGGCCCAGCACGTTGGCGCACACGTGCAGCTTCAGCGCGTCGCGCGGGCACGACGACCCGCCGCCGTAGTGAGGCGTCG
GCGGCTTCGGCCTCGGCGCCGGTGGCTTCGGCGAAGGGCAGTCCGGGCAGGCCACGGCCATGGCCACCACCAGGAGGCTCACCGCCAGCACAAGCGCCGC
CTTCGCCGCCATTGCTGCAACTAATCGAGCTAGTGTAGCTAGCTAGTAGCTCGAGCTTGCTGCTGCTGCTGCTGCTTGGTTGCTGTGGT