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Detailed information on CNT30676135


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9ZSP6|AIR1L_ARATH, E-value = 4e-19

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30690852Setaria viridisOryza sativa29.7946.2891.96112forward
CNT30664801Setaria viridisTriticum dicoccoides17.8221.4191.0467forward
CNT30348037Setaria viridisEragrostis tef35.927.0591.11135forward
CNT30365845Setaria viridisSorghum bicolor45.4836.3894.74171forward
CNT30595677Setaria viridisOryza meridionalis24.7315.0794.6293forward
CNT30105270Setaria viridisOryza longistaminata30.8522.3587.07116forward
CNT30115994Setaria viridisOryza nivara30.5915.9793.04115forward

Expression of CNT30676135

Peptides detected in this lncRNA

>peptide 1 (37 aa)
MRLTSIGRLRLMPRMLPLMAVQRHTAASRSTSPSSSGQ

>peptide 2 (40 aa)
MYWCRKRNKQQIKAKVIKRGVRICHCMHGSTSSQSCMQTS*

>peptide 3 (40 aa)
MEARPVSHACRPASSYSNQINLNSNVKTSDPHTSRFSSTR*

Sequence

>CNT30676135
CATGTACTGGTGCAGGAAAAGAAATAAGCAACAAATTAAAGCAAAGGTGATCAAACGAGGCGTACGCATTTGCCACTGCATGCATGGAAGCACGTCCAGT
CAGTCATGCATGCAGACCAGCTAGCTCGTACTCAAACCAAATAAACCTGAATTCAAACGTCAAGACATCCGATCCGCATACATCGCGATTCTCGAGCACG
CGGTAGAATGCTTAGAGGCACTTGAACCCGGTGGGCACGGTCTTGCCGCAGTGGTTGAGGATGAGGCTGACGTCGATTGGCAGGTTGAGGTTGATGCCGA
GGATGTTGCCCTTGATGGCGGTGCAGAGGCACACGGCGGCCTCGAGGTCGACGAGCCCCTCCAGCAGCGGGCAGCA