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Detailed information on CNT30150529


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30695632Brachypodium distachyonOryza sativa30.5213.2185.37123forward
CNT30675770Brachypodium distachyonSetaria viridis18.3624.7589.1974forward
CNT30523687Brachypodium distachyonSetaria italica30.5217.485.37123forward
CNT30554723Brachypodium distachyonOryza glaberrima30.529.0185.37123forward
CNT30339489Brachypodium distachyonEragrostis tef31.767.5284.38128forward
CNT30370946Brachypodium distachyonOryza glumipatula30.529.9484.55123forward
CNT30102863Brachypodium distachyonOryza rufipogon30.5212.2385.37123forward
CNT30577292Brachypodium distachyonOryza barthii30.5211.0885.37123forward
CNT30117377Brachypodium distachyonOryza nivara13.6526.9696.3655forward
CNT30604528Brachypodium distachyonOryza punctata30.5210.7785.37123forward

Expression of CNT30150529

Peptides detected in this lncRNA

>peptide 1 (29 aa)
RYYSTEPSASSVMYIPITSTPRSTMHPYT*

>peptide 2 (65 aa)
MHASICLQHQQVWMMVLCHGSDRCWNRLSSGPFPVTACCTEKPRYASIASLPTKSQNDQLNSFSV*

Sequence

>CNT30150529
CAAGATACTACAGCACTGAACCATCAGCTTCCTCTGTAATGTACATACCAATCACATCCACTCCTCGATCCACCATGCATCCATACACATAGCATGCATA
ACACTAGCACGGAGTAGTACTTTACAACACAAATTAAGTGCATTGTCGACCATTTCAACTAGAGAGACATATCGTCCCATCAATCAATTTTACATGCATG
CATCAATCTGCCTCCAGCACCAGCAGGTCTGGATGATGGTGTTGTGCCACGGGTCAGACAGGTGCTGGAACAGGTTGTCGAGCGGCCCTTTTCCGGTGAC
CGCGTGCTGCACCGAGAAACCCAGGTACGCCAGCATCGCCAGCCTCCCTACAAAATCACAAAACGACCAATTAAATTCCTTTTCCGTTTGAGATCTGGCC
GTA