Detailed information on CNT30117377


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30675560Oryza nivaraSetaria viridis29.914.9596.7261forward
CNT30516126Oryza nivaraJuglans regia25.988.5592.4553forward
CNT30506853Oryza nivaraNicotiana attenuata21.5713.9290.9144forward
CNT3084615Oryza nivaraVigna radiata23.534.1689.5848forward
CNT30171839Oryza nivaraTrifolium pratense21.575.8790.9144forward
CNT30339489Oryza nivaraEragrostis tef31.373.7696.8864forward
CNT30366637Oryza nivaraSorghum bicolor29.915.9798.3661forward
CNT30485406Oryza nivaraChara braunii28.9212.9188.1459forward
CNT30150529Oryza nivaraBrachypodium distachyon26.9613.6596.3655forward
CNT30584541Oryza nivaraEchinochloa crusgalli23.539.9210048forward

Expression of CNT30117377

Peptides detected in this lncRNA

>peptide 1 (36 aa)
QKKNEKKKETRREHLPSPNHRFHQPELIKLLEMPWP*

>peptide 2 (50 aa)
HKKKMKKKKKQEENIFHRPIIGFTSLNSSSSLRCPGPDEIDHTLSLTASG*

Sequence

>CNT30117377
CACAAAAAAAAAATGAAAAAAAAAAAGAAACAAGAAGAGAACATCTTCCATCGCCCAATCATCGGTTTCACCAGCCTGAACTCATCAAGCTCCTTGAGAT
GCCCTGGCCCTGATGAAATCGATCACACGCTCAGCCTGACAGCGTCTGGATGATGGTGTTGTGCCACGGGTCAGACAGGTGCTGCAGCAGGTTGTCGAAG
GGCC