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Detailed information on CNT30338292


BLAST search results

BLAST vs Swiss-Prot:
sp|Q40677|ALFP_ORYSJ, E-value = 2e-65

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30676761Eragrostis tefSetaria viridis51.5651.0893.33165forward
CNT30524157Eragrostis tefSetaria italica97.525.5994.23312forward
CNT30588905Eragrostis tefMusa acuminata41.8851.9484.33134forward
CNT30542943Eragrostis tefBrassica napus20.6214.2289.3966forward
CNT30439071Eragrostis tefAegilops tauschii3533.5392.86112forward
CNT30662744Eragrostis tefTriticum dicoccoides83.7550.1988.06268forward
CNT30261343Eragrostis tefBrassica rapa30.6318.5382.6598forward
CNT30217659Eragrostis tefKalanchoe fedtschenkoi31.8735.0590.2102forward
CNT30684371Eragrostis tefTriticum urartu39.3834.3389.68126forward
CNT30367530Eragrostis tefSorghum bicolor56.5653.2491.71181forward
CNT30371242Eragrostis tefOryza glumipatula47.8123.3692.16153forward
CNT30481517Eragrostis tefChara braunii36.5638.7483.76117forward
CNT30104026Eragrostis tefOryza rufipogon71.8826.0591.74230forward
CNT30578122Eragrostis tefOryza barthii3514.2192.86112forward
CNT30595262Eragrostis tefEragrostis curvula78.1234.6394.4250forward
CNT30557232Eragrostis tefPanicum hallii74.6935.9492.47239forward
CNT30551343Eragrostis tefOryza brachyantha25.3112.987.6581forward

Expression of CNT30338292

Peptides detected in this lncRNA

>peptide 1 (65 aa)
LVAIVLDEHALLGLRSLAVGCVLAELRERVGLGAEQQRVLRGLDVLGLVAPRLEAGVLQRPRVGE*

>peptide 2 (54 aa)
MPSLASAASPSDVYLPSCASELALARSSSASCAALTFSGWSPHVLRPVFCSARA*

>peptide 3 (30 aa)
MALRFCVASTSDCPPERNMIPGTAGGMRRGG

Sequence

>CNT30338292
ATTAGTAGCTATAGTTCTTGACGAACATGCCCTCCTTGGCCTCCGCAGCCTCGCCGTCGGATGTGTACTTGCCGAGCTGCGCGAGCGAGTTGGCCTTGGC
GCGGAGCAGCAGCGCGTCCTGCGCGGCCTTGACGTTCTCGGGCTGGTCGCCCCACGTCTTGAGGCCGGTGTTCTGCAGCGCCCGCGCGTAGGAGAATGAC
ACGTGCCACGGGTTGGGCCCCTGGTTCATGGCGTTGAGGTTCTGCGTCGCCTCCACCTCCGACTGCCCGCCGGAGAGGAACATGATCCCCGGCACGGCCG
GCGGGATGCGGCGGGGGGGC