Detailed information on CNT30578122


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30696990Oryza barthiiOryza sativa54.8249.94100432forward
CNT30676219Oryza barthiiSetaria viridis18.459.6795.86145forward
CNT30523899Oryza barthiiSetaria italica16.3721.993.8129forward
CNT30377016Oryza barthiiArabidopsis thaliana10.5322.884.3483forward
CNT30662744Oryza barthiiTriticum dicoccoides14.9722.189.83118forward
CNT3017095Oryza barthiiZea mays16.3724.3492.25129forward
CNT3068331Oryza barthiiLeersia perrieri20.5621.1298.77162forward
CNT30338292Oryza barthiiEragrostis tef14.213592.86112forward
CNT30367530Oryza barthiiSorghum bicolor16.3737.9493.02129forward
CNT30597047Oryza barthiiOryza meridionalis36.4229.5397.91287forward
CNT30371334Oryza barthiiOryza glumipatula47.9744.63100378forward
CNT30570222Oryza barthiiVitis vinifera13.220.8482.69104forward
CNT30150970Oryza barthiiBrachypodium distachyon15.6151.0488.62123forward
CNT30104230Oryza barthiiOryza rufipogon39.4712.6399.36311forward
CNT30581883Oryza barthiiEchinochloa crusgalli16.2422.5493.75128forward
CNT30117905Oryza barthiiOryza nivara54.8237.4100432forward
CNT30557146Oryza barthiiPanicum hallii6.8522.2290.7454forward

Expression of CNT30578122

Peptides detected in this lncRNA

>peptide 1 (63 aa)
MPSLASAASPSLVYLPSCASELALARRSSAFCVASTSDCPPDKNCTKQQSINIIDQLYFQVYS*

>peptide 2 (73 aa)
AKGVTRIIPETQACIYTQNFAVTKSIHRPHIQVVYRFVYTQGFCRGKTRGMYIKRSRKDSCDEIHDEPRMFSR*

>peptide 3 (57 aa)
MQYSFNFVHRSQPVTVTTHWLQCPRGTSSIAVAVVRSSSSSRFTVLIGLDRISRRSS*

>peptide 4 (43 aa)
MYIYAKLCSNQIDSQATHTGSIQIRLHTRFLQRQNTRYVYQTL*

Sequence

>CNT30578122
GCTAAGGGGGTAACCAGAATAATTCCAGAAACACAAGCATGTATATATACGCAAAACTTTGCAGTAACCAAATCGATTCACAGGCCACACATACAGGTAG
TATACAGATTCGTCTACACACAAGGTTTTTGCAGAGGCAAAACACGAGGTATGTATATCAAACGCTCTAGAAAAGATTCATGTGATGAAATACATGATGA
ACCACGTATGTTCTCAAGGTAAAATTAATTAATGCAGTATAGTTTTAACTTTGTCCATCGATCTCAACCTGTAACTGTGACGACACACTGGCTACAGTGC
CCTCGAGGTACTAGCAGTATAGCAGTAGCTGTAGTACGTAGCAGCAGCAGCAGCAGGTTCACTGTCTTGATTGGATTGGATCGGATTAGTAGACGTAGTT
CTTGACGAACATGCCCTCCTTGGCCTCGGCGGCCTCGCCGTCGCTGGTGTACTTGCCGAGCTGCGCCAGCGAGTTGGCCTTGGCGCGGAGGAGCAGCGCG
TTCTGCGTCGCCTCCACCTCCGACTGCCCACCCGACAAGAACTGCACCAAACAACAATCAATCAATATTATCGATCAGCTCTACTTTCAGGTTTATTCTT
GATCATCTACATCTGCAGAGACAGTTAGTAGTATCGTTGTGCAAGAAGAATCATGTCAGAATTAGCAGATCAACATTTGCAGTGGCAGTTTCTTGATCAA
CATTTCCAGTCAGGTTAAGCCATTTTGCAAGAAGAATCAGGTTAAGCTTTTAACATTTGCAGCGGCAGTTTCTTGATCAACATTCCAA