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Detailed information on CNT30551343


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30222685Oryza brachyanthaHordeum vulgare9.8721.0990.3262forward
CNT30443778Oryza brachyanthaAegilops tauschii36.7849.6893.07231forward
CNT30338292Oryza brachyanthaEragrostis tef12.925.3187.6581forward
CNT30370572Oryza brachyanthaOryza glumipatula28.0372.1397.73176forward
CNT30116996Oryza brachyanthaOryza nivara45.3885.5987.37285forward

Expression of CNT30551343

Peptides detected in this lncRNA

>peptide 1 (56 aa)
MVLCCSARPKEKVSVHGLSTASLFMAFRFCDASSSLCPPERNTIPGTAGGTVRRSAA

>peptide 2 (32 aa)
MYIRTNLRAIHAAHADSADWTETLLVSWAQPQ*

Sequence

>CNT30551343
TATCAGCAGTACTAATATTAGTGTGCATTGCAAAATAATTGCAAAGAGATCAACACAATTTTAGACACATTTTTTGTTTGTTAAAAACATAAGAGCTAGG
GGGGAGGGGGAGCAGAGAATTTGAGTATACAGCACAAAGGAACAACATGTATATCCGCACGAATCTCCGAGCAATCCACGCCGCCCACGCGGACAGCGCG
GATTGGACGGAGACCCTACTAGTGTCATGGGCACAGCCGCAGTGAGGCGCCACCGGTGATCGACGGATGATCTAGTAGGTGTAGCCCTTGACGTACAGGC
TCTCGGACGTGGCGGGGGCGCCGGCGGCGGCGCCGCCCTCGCCGAGCGTGGCCTCGGAGTTGGCCTTGCACCGGGCGAGGAAGGCGGCCTGCGCGGTGGC
GACGAAGGCGGCCTGCGCGGTGGCGACGTTCTCCTTCTTGCCAGCCCACTTCTTGATGGTGCTCTGCTGCAGCGCGCGGCCGAAGGAGAAGGTGAGCGTC
CATGGCTTGAGCACCGCCAGCTTGTTCATGGCGTTCAGGTTCTGCGACGCCTCCTCCTCGCTCTGCCCGCCGGAGAGGAACACTATCCCGGGCACCGCCG
GCGGCACCGTGCGCCGCAGCGCCGCCAC