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Detailed information on CNT30481517


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30676392Chara brauniiSetaria viridis21.8517.9387.8866forward
CNT30524056Chara brauniiSetaria italica38.7410.8183.76117forward
CNT30727836Chara brauniiCorchorus capsularis41.3933.681.6125forward
CNT30710677Chara brauniiGlycine max25.516.9688.3177forward
CNT30223084Chara brauniiHordeum vulgare28.4811.0388.3786forward
CNT30542943Chara brauniiBrassica napus24.1715.7386.373forward
CNT30237226Chara brauniiBrassica oleracea31.7921.1985.4296forward
CNT30145300Chara brauniiMedicago truncatula25.535.3285.7177forward
CNT30439071Chara brauniiAegilops tauschii29.826.9588.8990forward
CNT30258087Chara brauniiAvena sativa24.1715.686.373forward
CNT30662744Chara brauniiTriticum dicoccoides37.0920.9786.61112forward
CNT30462400Chara brauniiSaccharum spontaneum37.098.2381.25112forward
CNT30136123Chara brauniiLolium perenne37.0920.6686.61112forward
CNT307142Chara brauniiZea mays37.098.9583.04112forward
CNT30610723Chara brauniiGossypium raimondii30.7918.0284.9593forward
CNT30217653Chara brauniiKalanchoe fedtschenkoi30.4635.2586.9692forward
CNT30338292Chara brauniiEragrostis tef38.7436.5683.76117forward
CNT30620107Chara brauniiCajanus cajan35.17.6384.91106forward
CNT30104100Chara brauniiOryza rufipogon29.816.4887.7890forward
CNT30595262Chara brauniiEragrostis curvula21.859.1487.8866forward
CNT30557232Chara brauniiPanicum hallii22.5210.2388.2468forward
CNT30334895Chara brauniiCynara cardunculus40.0729.7384.3121forward

Expression of CNT30481517

Peptides detected in this lncRNA

>peptide 1 (66 aa)
LLRERVQFRPVHERLLRGISVRRLTPPHLQDRVLQRSRVRERHVPRVRRLVHRVQIERGLHLRLPS*

>peptide 2 (56 aa)
PAARASSISPCTRAPSARHQRSPAHPPTSSRQSSAALARTRTTRATGSETGSSRSN*

>peptide 3 (98 aa)
PCCASEFNFALYTSAFCAASAFAGSPPHIFKTEFCSARAYENDTCHGFGDWFIAFKLSVASTSDCPPDKNMIPGTDGGTRLLRSFNVDGTIFSDMPVA*

Sequence

>CNT30481517
CCCTGCTGCGCGAGCGAGTTCAATTTCGCCCTGTACACGAGCGCCTTCTGCGCGGCATCAGCGTTCGCCGGCTCACCCCCCCACATCTTCAAGACAGAGT
TCTGCAGCGCTCGCGCGTACGAGAACGACACGTGCCACGGGTTCGGAGACTGGTTCATCGCGTTCAAATTGAGCGTGGCCTCCACCTCAGACTGCCCTCC
TGACAAGAACATGATTCCTGGAACCGACGGCGGCACCCGCCTCCTTAGGAGCTTCAACGTGGACGGCACGATCTTCAGCGACATGCCAGTGGCGTGAGCG
GC